<?xml version="1.0" encoding="UTF-8"?>
<!--This is the DTD for establishment.-->

<!--Root-->
<!ELEMENT establishment (es_scarifiedSoilCanopyFav?, es_tipUpCanopyFav?,
	es_freshLogCanopyFav?, es_decayedLogCanopyFav?, 
	es_forestFloorCanopyFav?, es_scarifiedSoilGapFav?, es_tipUpGapFav?,
	es_freshLogGapFav?, es_decayedLogGapFav?, es_forestFloorGapFav?, 

	es_mossMoundFav?, es_mineralSoilMoundFav?, es_freshLogMoundFav?, 
	es_mossyLogMoundFav?, es_litterMoundFav?, es_mossGroundFav?, 
	es_mineralSoilGroundFav?, es_freshLogGroundFav?, es_mossyLogGroundFav?, 
	es_litterGroundFav?, es_optimumGLI?, es_lowSlope?, es_highSlope?, 
	es_lightHeight?, es_moundProportion?, es_maxRespite?, es_meanMoundHeight?, 
	es_moundStdDev?, es_meanFreshLogHeight?, es_freshLogStdDev?, 

	es_optimumGLI?, es_lowSlope?, es_highSlope?, es_lightHeight?, 
	es_densDepSlope?, es_densDepSteepness?, es_lightExtCoeffPartDmg?, 
	es_lightExtCoeffFullDmg?, li_beamFractGlobalRad?, li_clearSkyTransCoeff?, 
	li_julianDayGrowthStarts?,
	li_julianDayGrowthEnds?, li_minSunAngle?, li_numAltGrids?, li_numAziGrids?,
	
	ge_proportionGerminating?)>
 
<!--**************************************************
      Substrate dependent seed survival
	**************************************************-->
<!--Canopy substrate favorability-->
<!--Scarified soil canopy favorability - species-specific-->
<!ELEMENT es_scarifiedSoilCanopyFav (es_sscfVal+)*>
<!ELEMENT es_sscfVal (#PCDATA)>
<!ATTLIST es_sscfVal species IDREF #REQUIRED>

<!--Tip-up mounds canopy favorability - species-specific-->
<!ELEMENT es_tipUpCanopyFav (es_tucfVal+)*>
<!ELEMENT es_tucfVal (#PCDATA)>
<!ATTLIST es_tucfVal species IDREF #REQUIRED>

<!--Fresh logs canopy favorability - species-specific-->
<!ELEMENT es_freshLogCanopyFav (es_flcfVal+)*>
<!ELEMENT es_flcfVal (#PCDATA)>
<!ATTLIST es_flcfVal species IDREF #REQUIRED>

<!--Decayed logs canopy favorability - species-specific-->
<!ELEMENT es_decayedLogCanopyFav (es_dlcfVal+)*>
<!ELEMENT es_dlcfVal (#PCDATA)>
<!ATTLIST es_dlcfVal species IDREF #REQUIRED>

<!--Forest floor canopy favorability - species-specific-->
<!ELEMENT es_forestFloorCanopyFav (es_ffcfVal+)*>
<!ELEMENT es_ffcfVal (#PCDATA)>
<!ATTLIST es_ffcfVal species IDREF #REQUIRED>


<!--Gap substrate favorability-->
<!--Scarified soil gap favorability - species-specific-->
<!ELEMENT es_scarifiedSoilGapFav (es_ssgfVal+)*>
<!ELEMENT es_ssgfVal (#PCDATA)>
<!ATTLIST es_ssgfVal species IDREF #REQUIRED>

<!--Tip-up mounds gap favorability - species-specific-->
<!ELEMENT es_tipUpGapFav (es_tugfVal+)*>
<!ELEMENT es_tugfVal (#PCDATA)>
<!ATTLIST es_tugfVal species IDREF #REQUIRED>

<!--Fresh logs gap favorability - species-specific-->
<!ELEMENT es_freshLogGapFav (es_flgfVal+)*>
<!ELEMENT es_flgfVal (#PCDATA)>
<!ATTLIST es_flgfVal species IDREF #REQUIRED>

<!--Decayed logs gap favorability - species-specific-->
<!ELEMENT es_decayedLogGapFav (es_dlgfVal+)*>
<!ELEMENT es_dlgfVal (#PCDATA)>
<!ATTLIST es_dlgfVal species IDREF #REQUIRED>

<!--Forest floor gap favorability - species-specific-->
<!ELEMENT es_forestFloorGapFav (es_ffgfVal+)*>
<!ELEMENT es_ffgfVal (#PCDATA)>
<!ATTLIST es_ffgfVal species IDREF #REQUIRED>

<!--******************************************
	Density dependent seed survival parameters
	******************************************-->
<!--Density-dependence slope - species-specific-->
<!ELEMENT es_densDepSlope (es_ddsVal+)*>
<!ELEMENT es_ddsVal (#PCDATA)>
<!ATTLIST es_ddsVal species IDREF #REQUIRED>

<!--Density-dependence steepness - species-specific-->
<!ELEMENT es_densDepSteepness (es_ddstVal+)*>
<!ELEMENT es_ddstVal (#PCDATA)>
<!ATTLIST es_ddstVal species IDREF #REQUIRED>

<!--******************************************
	Light dependent seed survival parameters
	******************************************-->
<!--Optimum GLI at which establishment is not reduced - species-specific-->
<!ELEMENT es_optimumGLI (es_ogVal+)*>
<!ELEMENT es_ogVal (#PCDATA)>
<!ATTLIST es_ogVal species IDREF #REQUIRED>

<!--Slope of light favorability dropoff when GLI is below the 
    optimum GLI - species-specific-->
<!ELEMENT es_lowSlope (es_lsVal+)*>
<!ELEMENT es_lsVal (#PCDATA)>
<!ATTLIST es_lsVal species IDREF #REQUIRED>

<!--Slope of light favorability dropoff when GLI is above the 
    optimum GLI - species-specific-->
<!ELEMENT es_highSlope (es_hsVal+)*>
<!ELEMENT es_hsVal (#PCDATA)>
<!ATTLIST es_hsVal species IDREF #REQUIRED>

<!--Height at which light is to be calculated, in m-->
<!ELEMENT es_lightHeight (#PCDATA)>

<!--Light extinction coefficient of partially damaged trees - 
	not required - species-specific-->
<!ELEMENT es_lightExtCoeffPartDmg (es_lecpdVal+)*>
<!ELEMENT es_lecpdVal (#PCDATA)>
<!ATTLIST es_lecpdVal	species IDREF #REQUIRED>

<!--Light extinction coefficient of fully damaged trees - 
	not required - species-specific-->
<!ELEMENT es_lightExtCoeffFullDmg (es_lecfdVal+)*>
<!ELEMENT es_lecfdVal (#PCDATA)>
<!ATTLIST es_lecfdVal	species IDREF #REQUIRED>

<!--Light values from GLILight.dtd: li_beamFractGlobalRad, li_clearSkyTransCoeff,
li_julianDayGrowthStarts, li_julianDayGrowthEnds, li_minSunAngle, li_numAltGrids,
li_numAziGrids, li_lightExtinctionCoefficient, li_snag1LightExtinctionCoefficient,
li_snag2LightExtinctionCoefficient, li_snag3LightExtinctionCoefficient-->

<!--******************************************
	Proportional seed survival parameters
	******************************************-->
<!--Proportion germinating, as a proportion between 0 and 1, species-specific-->
<!ELEMENT ge_proportionGerminating (ge_pgVal+)*>
<!ELEMENT ge_pgVal (#PCDATA)>
<!ATTLIST ge_pgVal species IDREF #REQUIRED>

<!--******************************************
	Puerto Rico establishment parameters
	******************************************
Optimum GLI at which establishment is not reduced - species-specific
<!ELEMENT es_prOptimumGLI (es_pogVal+)*>
<!ELEMENT es_pogVal (#PCDATA)>
<!ATTLIST es_pogVal species IDREF #REQUIRED>

Slope of light favorability dropoff when GLI is below the 
    optimum GLI - species-specific
<!ELEMENT es_prLowSlope (es_plsVal+)*>
<!ELEMENT es_plsVal (#PCDATA)>
<!ATTLIST es_plsVal species IDREF #REQUIRED>

Slope of light favorability dropoff when GLI is above the 
    optimum GLI - species-specific
<!ELEMENT es_prHighSlope (es_phsVal+)*>
<!ELEMENT es_phsVal (#PCDATA)>
<!ATTLIST es_phsVal species IDREF #REQUIRED>

Height at which light is to be calculated, in m
<!ELEMENT es_prLightHeight (#PCDATA)>

Light extinction coefficient of undamaged trees - species-specific
Use li_lightExtinctionCoefficient

Light extinction coefficient of partially damaged trees - species-specific
<!ELEMENT es_prLightExtCoeffPartDmg (es_plecpdVal+)*>
<!ELEMENT es_plecpdVal (#PCDATA)>
<!ATTLIST es_plecpdVal	species IDREF #REQUIRED>

Light extinction coefficient of fully damaged trees - species-specific
<!ELEMENT es_prLightExtCoeffFullDmg (es_plecfdVal+)*>
<!ELEMENT es_plecfdVal (#PCDATA)>
<!ATTLIST es_plecfdVal	species IDREF #REQUIRED>

Light values from GLILight.dtd: li_beamFractGlobalRad, li_clearSkyTransCoeff,
li_julianDayGrowthStarts, li_julianDayGrowthEnds, li_minSunAngle, li_numAltGrids,
li_numAziGrids-->

<!--******************************************
	New Zealand establishment parameters
	******************************************-->
<!--Mound substrate favorabilities-->
<!--Moss mound favorability - species-specific-->
<!ELEMENT es_mossMoundFav (es_mmfVal+)*>
<!ELEMENT es_mmfVal (#PCDATA)>
<!ATTLIST es_mmfVal species IDREF #REQUIRED>

<!--Mineral soil mound favorability - species-specific-->
<!ELEMENT es_mineralSoilMoundFav (es_msmfVal+)*>
<!ELEMENT es_msmfVal (#PCDATA)>
<!ATTLIST es_msmfVal species IDREF #REQUIRED>

<!--Fresh logs mound favorability - species-specific-->
<!ELEMENT es_freshLogMoundFav (es_flmfVal+)*>
<!ELEMENT es_flmfVal (#PCDATA)>
<!ATTLIST es_flmfVal species IDREF #REQUIRED>

<!--Mossy logs mound favorability - species-specific-->
<!ELEMENT es_mossyLogMoundFav (es_mlmfVal+)*>
<!ELEMENT es_mlmfVal (#PCDATA)>
<!ATTLIST es_mlmfVal species IDREF #REQUIRED>

<!--Litter mound favorability - species-specific-->
<!ELEMENT es_litterMoundFav (es_lmfVal+)*>
<!ELEMENT es_lmfVal (#PCDATA)>
<!ATTLIST es_lmfVal species IDREF #REQUIRED>

<!--Ground substrate favorabilities-->
<!--Moss ground favorability - species-specific-->
<!ELEMENT es_mossGroundFav (es_mgfVal+)*>
<!ELEMENT es_mgfVal (#PCDATA)>
<!ATTLIST es_mgfVal species IDREF #REQUIRED>

<!--Mineral soil ground favorability - species-specific-->
<!ELEMENT es_mineralSoilGroundFav (es_msgfVal+)*>
<!ELEMENT es_msgfVal (#PCDATA)>
<!ATTLIST es_msgfVal species IDREF #REQUIRED>

<!--Fresh logs ground favorability - species-specific-->
<!ELEMENT es_freshLogGroundFav (es_flgfVal+)*>
<!ELEMENT es_flgfVal (#PCDATA)>
<!ATTLIST es_flgfVal species IDREF #REQUIRED>

<!--Mossy logs ground favorability - species-specific-->
<!ELEMENT es_mossyLogGroundFav (es_mlgfVal+)*>
<!ELEMENT es_mlgfVal (#PCDATA)>
<!ATTLIST es_mlgfVal species IDREF #REQUIRED>

<!--Litter ground favorability - species-specific-->
<!ELEMENT es_litterGroundFav (es_lgfVal+)*>
<!ELEMENT es_lgfVal (#PCDATA)>
<!ATTLIST es_lgfVal species IDREF #REQUIRED>

<!--Optimum GLI at which establishment is not reduced - species-specific-->
<!ELEMENT es_optimumGLI (es_ogVal+)*>
<!ELEMENT es_ogVal (#PCDATA)>
<!ATTLIST es_ogVal species IDREF #REQUIRED>

<!--Slope of light favorability dropoff when GLI is below the 
    optimum GLI - species-specific-->
<!ELEMENT es_lowSlope (es_lsVal+)*>
<!ELEMENT es_lsVal (#PCDATA)>
<!ATTLIST es_lsVal species IDREF #REQUIRED>

<!--Slope of light favorability dropoff when GLI is above the 
    optimum GLI - species-specific-->
<!ELEMENT es_highSlope (es_hsVal+)*>
<!ELEMENT es_hsVal (#PCDATA)>
<!ATTLIST es_hsVal species IDREF #REQUIRED>

<!--Height at which light is to be calculated, in m, if 
	light is being used in establishment-->
<!ELEMENT es_lightHeight (#PCDATA)>

<!--Proportion of the plot which is mound-->
<!ELEMENT es_moundProportion (#PCDATA)>

<!--Maximum number of years of fern respite-->
<!ELEMENT es_maxRespite (#PCDATA)>

<!--Mean mound height, in meters-->
<!ELEMENT es_meanMoundHeight (#PCDATA)>

<!--Mound height standard deviation, in meters-->
<!ELEMENT es_moundStdDev (#PCDATA)>

<!--Mean fresh log substrate height, in meters-->
<!ELEMENT es_meanFreshLogHeight (#PCDATA)>

<!--Fresh log substrate height standard deviation, in meters-->
<!ELEMENT es_freshLogStdDev (#PCDATA)>