 ActionListener | |
  sortie.datavisualizer.DataRequest | This class is used by the DetailedOutputFileManager class to manage open requests for data |
   sortie.datavisualizer.CarbonValueDataRequest | Produces a table of carbon value results |
   sortie.datavisualizer.FoliarChemistryLineGraphDataRequest | Produces a line graph of foliar chemistry results (one component - i.e |
   sortie.datavisualizer.FoliarChemistryTableDataRequest | Produces a table of foliar chemistry results |
   sortie.datavisualizer.GridAllSpeciesHistogramDataRequest | This controls the drawing of a histogram for all species at once for a grid for those grids that display values by species |
   sortie.datavisualizer.GridDataRequest | Draws a map for a single grid's data member |
   sortie.datavisualizer.GridHistogramDataRequest | This controls the drawing of a histogram for a single piece of grid information |
   sortie.datavisualizer.HarvestDataRequest | Produces a table of harvest or mortality episode results |
   sortie.datavisualizer.HistogramDataRequest | This controls the drawing of a histogram for a single piece of information |
   sortie.datavisualizer.LineGraphDataRequest | Creates different types of line graphs for detailed output files |
   sortie.datavisualizer.MerchValueDataRequest | Produces a table of merchantable timber value results |
   sortie.datavisualizer.OverviewTableDataRequest | Writes an overview table for a detailed output file (basal area and density for each life history stage) |
   sortie.datavisualizer.PartitionedBiomassLineGraphDataRequest | Produces a line graph of partitioned biomass results (one component - i.e |
   sortie.datavisualizer.PartitionedBiomassTableDataRequest | Produces a table of partitioned biomass results |
   sortie.datavisualizer.RelativeNeighborhoodDensityDataRequest | Produces a line graph of Relative Neighborhood Density grid results |
   sortie.datavisualizer.RipleysKDataRequest | Produces a line graph of Ripley's K results |
   sortie.datavisualizer.SeedTableDataRequest | Produces a table of dispersed seeds |
   sortie.datavisualizer.StandTableDataRequest | Writes a stand table for a detailed output file (basal area or density for each life history stage throughout the run) |
   sortie.datavisualizer.StateVariableTableDataRequest | Produces a table of state variable results |
   sortie.datavisualizer.StockTableDataRequest | Writes a stock table for a detailed output file |
   sortie.datavisualizer.StormDataRequest | Produces a table of storm results |
   sortie.datavisualizer.StormKilledPartitionedBiomassDataRequest | Produces a table of partitioned biomass results |
   sortie.datavisualizer.TreeListWriter | This class will write a complete tree list for any desired time step |
   sortie.datavisualizer.TreeMapCrownRadDataRequest | This class manages the data for, and draws, tree maps |
   sortie.datavisualizer.TreeMapDataRequest | This class manages the data for, and draws, tree maps |
   sortie.datavisualizer.WindstormDataRequest | Produces a table of windstorm results |
  sortie.datavisualizer.OverviewTableDataRequest | Writes an overview table for a detailed output file (basal area and density for each life history stage) |
  sortie.datavisualizer.StandTableDataRequest | Writes a stand table for a detailed output file (basal area or density for each life history stage throughout the run) |
  sortie.gui.Diam10Edit | For editing initial diam10s for planting |
  sortie.gui.DisplayBehaviorComboEdit | Displays an edit window for editing the tree species/type combos to which a single behavior applies |
  sortie.gui.GridSetup | Displays grid settings for editing |
  sortie.gui.GridValueEditor | Window for editing grid values in a spreadsheet-like format |
  sortie.gui.HarvestInterfaceSetup | This is a window allowing setup of the Harvest Interface behavior |
  sortie.gui.HarvestInterfaceSetup.FileColumnsChooser | Dialog for choosing new file columns |
  sortie.gui.ParameterEdit | Window used to trigger the parameter editing process |
 sortie.tools.batchoutput.BatchDetailedOutput | This class allows the user to set up batch extraction of data from detailed output files |
 sortie.data.funcgroups.Behavior | Represents a single behavior in the core |
  sortie.data.funcgroups.Allometry | This holds all data relating to allometry |
  sortie.data.funcgroups.analysis.BoleVolumeCalculator | Corresponds to the clBoleVolumeCalculator class |
  sortie.data.funcgroups.analysis.CarbonValueCalculator | Corresponds to the clCarbonValueCalculator class |
  sortie.data.funcgroups.analysis.ConditOmegaCalculator | Corresponds to the clConditOmegaCalculator class |
  sortie.data.funcgroups.analysis.DimensionAnalysis | Corresponds to the clDimensionAnalysis class |
  sortie.data.funcgroups.analysis.FoliarChemistry | Corresponds to the clFoliarChemistry class |
  sortie.data.funcgroups.analysis.MerchValueCalculator | Corresponds to the clMerchValueCalculator class |
  sortie.data.funcgroups.analysis.PartitionedDBHBiomass | Corresponds to the clPartitionedBiomass class |
  sortie.data.funcgroups.analysis.PartitionedHeightBiomass | Corresponds to the clPartitionedBiomass class |
  sortie.data.funcgroups.analysis.RipleysKCalculator | Corresponds to the clRipleysKCalculator class |
  sortie.data.funcgroups.analysis.StateReporter | Corresponds to the clStateReporter class |
  sortie.data.funcgroups.analysis.StormKilledPartitionedDBHBiomass | Corresponds to the clStormKilledPartitionedBiomass class |
  sortie.data.funcgroups.analysis.StormKilledPartitionedHeightBiomass | Corresponds to the clStormKilledPartitionedBiomass class |
  sortie.data.funcgroups.analysis.TreeAgeCalculator | Corresponds to the clTreeAgeCalculator class |
  sortie.data.funcgroups.analysis.VolumeCalculator | Corresponds to the clVolumeCalculator class |
  sortie.data.funcgroups.disperse.DisperseBase | |
   sortie.data.funcgroups.disperse.MastingNonSpatialDisperse | Corresponds to the clMastingNonSpatialDisperse class |
   sortie.data.funcgroups.disperse.NonSpatialDisperse | Corresponds to the clNonSpatialDispersal class |
   sortie.data.funcgroups.disperse.SpatialDisperseBase | Corresponds to the clSpatialDispersal class |
    sortie.data.funcgroups.disperse.GapSpatialDisperse | Corresponds to the clSpatialDispersal class |
    sortie.data.funcgroups.disperse.MastingSpatialDisperse | Corresponds to the clMastingSpatialDisperse class |
    sortie.data.funcgroups.disperse.NonGapSpatialDisperse | Corresponds to the clSpatialDispersal class |
   sortie.data.funcgroups.disperse.TemperatureDependentNeighborhoodDisperse | Corresponds to the clSpatialDispersal class |
  sortie.data.funcgroups.disturbance.CompetitionHarvest | Corresponds to the clCompetitionHarvest class |
  sortie.data.funcgroups.disturbance.EpisodicMortality | Corresponds to the clDisturbance class |
  sortie.data.funcgroups.disturbance.GeneralizedHarvestRegime | Corresponds to the clGeneralizedHarvestRegime class |
  sortie.data.funcgroups.disturbance.Harvest | Corresponds to the clDisturbance class |
  sortie.data.funcgroups.disturbance.HarvestInterface | Corresponds to the clHarvestInterface class |
  sortie.data.funcgroups.disturbance.InsectInfestation | Corresponds to the clInsectInfestation class |
  sortie.data.funcgroups.disturbance.RandomBrowse | Corresponds to the clRandomBrowse class |
  sortie.data.funcgroups.disturbance.SelectionHarvest | Corresponds to the clSelectionHarvest class |
  sortie.data.funcgroups.disturbance.Storm | Corresponds to the clStorm class |
  sortie.data.funcgroups.disturbance.StormDamageApplier | Corresponds to the clStormDamageApplier class |
  sortie.data.funcgroups.disturbance.StormDamageKiller | Corresponds to the clStormKiller class |
  sortie.data.funcgroups.disturbance.StormDirectKiller | Corresponds to the clStormDirectKiller class |
  sortie.data.funcgroups.disturbance.Windstorm | Corresponds to the clWindstorm class |
  sortie.data.funcgroups.epiphyticestablishment.EpiphyticEstablishment | Corresponds to the clEpiphyticEstablishment class |
  sortie.data.funcgroups.establishment.ConspecificTreeDensitySeedSurvival | Corresponds to the clDensitySeedSurvival class |
  sortie.data.funcgroups.establishment.DensityDependentSeedSurvival | Corresponds to the clDensitySeedSurvival class |
  sortie.data.funcgroups.establishment.Establishment | Corresponds to the clEstablishment class |
  sortie.data.funcgroups.establishment.LightDependentSeedSurvival | Corresponds to the clLightDepSeedSurvival class |
  sortie.data.funcgroups.establishment.MicroEstablishment | Corresponds to the clMicroEstablishment class |
  sortie.data.funcgroups.establishment.MicrotopographicSubstrateSeedSurvival | Corresponds to the clSubstrateDepSeedSurvival class |
  sortie.data.funcgroups.establishment.ProportionalSeedSurvival | Corresponds to the clGermination class |
  sortie.data.funcgroups.establishment.StormLightDependentSeedSurvival | Corresponds to the clLightDepSeedSurvival class |
  sortie.data.funcgroups.establishment.SubstrateDepEstablishmentBase | |
   sortie.data.funcgroups.establishment.GapSubstrateSeedSurvival | Corresponds to the clSubstrateDepSeedSurvival class |
   sortie.data.funcgroups.establishment.NoGapSubstrateSeedSurvival | Corresponds to the clSubstrateDepSeedSurvival class |
  sortie.data.funcgroups.growth.AbsoluteGrowthBALimited | Corresponds to the clAbsoluteGrowth class |
  sortie.data.funcgroups.growth.AbsoluteGrowthRadialLimited | Corresponds to the clAbsoluteGrowth class |
  sortie.data.funcgroups.growth.AbsoluteUnlimited | Corresponds to the clAbsoluteGrowth class |
  sortie.data.funcgroups.growth.AllometricDiam | Corresponds to the clAllometricGrowthIncrementer class |
  sortie.data.funcgroups.growth.AllometricHeight | Corresponds to the clAllometricGrowthIncrementer class |
  sortie.data.funcgroups.growth.BrowsedRelativeGrowth | Corresponds to the clBrowsedRelativeGrowth class |
  sortie.data.funcgroups.growth.ConstantBA | Corresponds to the clConstantBAGrowth class |
  sortie.data.funcgroups.growth.ConstantRadial | Corresponds to the clConstantBAGrowth class |
  sortie.data.funcgroups.growth.DoubleMMRel | Corresponds to the clDoubleMMRelGrowth class |
  sortie.data.funcgroups.growth.LaggedPostHarvestGrowth | Corresponds to the clLaggedPostHarvestGrowth class |
  sortie.data.funcgroups.growth.LinearBiLevel | Corresponds to the clLinearBiLevelGrowth class |
  sortie.data.funcgroups.growth.LogBiLevel | Corresponds to the clLogBiLevelGrowth class |
  sortie.data.funcgroups.growth.Logistic | Corresponds to the clLogisticGrowth class |
  sortie.data.funcgroups.growth.LogisticHeightOnly | Corresponds to the clLogisticGrowth class |
  sortie.data.funcgroups.growth.Lognormal | Corresponds to the clLognormalGrowth class |
  sortie.data.funcgroups.growth.LognormalHeightOnly | Corresponds to the clLognormalGrowth class |
  sortie.data.funcgroups.growth.MichMenNeg | Corresponds to the clMichMenNegGrowth class |
  sortie.data.funcgroups.growth.MichMenPhotoinhibition | Corresponds to the clMichMenPhotoinhibition class |
  sortie.data.funcgroups.growth.NCI | Corresponds to the clNCIGrowth class |
  sortie.data.funcgroups.growth.NCIBA | Corresponds to the clNCIBAGrowth class |
  sortie.data.funcgroups.growth.NCIJuvenile | Corresponds to the clNCIJuvenileGrowth class |
  sortie.data.funcgroups.growth.PowerHeight | Corresponds to the clPowerHeightGrowth class |
  sortie.data.funcgroups.growth.PRSemiStochDiamOnly | Corresponds to the clPRSemiStochGrowth class |
  sortie.data.funcgroups.growth.PRStormBiLevel | Corresponds to the clPRStormBiLevelGrowth class |
  sortie.data.funcgroups.growth.RelativeGrowthBALimited | Corresponds to the clRelativeGrowth class |
  sortie.data.funcgroups.growth.RelativeGrowthRadialLimited | Corresponds to the clRelativeGrowth class |
  sortie.data.funcgroups.growth.RelativeHeight | Corresponds to the clRelativeGrowth class |
  sortie.data.funcgroups.growth.RelativeUnlimited | Corresponds to the clRelativeGrowth class |
  sortie.data.funcgroups.growth.ShadedLinearGrowth | Corresponds to the clShadedLinearGrowth class |
  sortie.data.funcgroups.growth.ShadedLinearGrowthHeightOnly | Corresponds to the clShadedLinearGrowth class |
  sortie.data.funcgroups.growth.SimpleLinear | Corresponds to the clSimpleLinearGrowth class |
  sortie.data.funcgroups.growth.SimpleLinearHeightOnly | Corresponds to the clSimpleLinearGrowth class |
  sortie.data.funcgroups.growth.SizeDepLogistic | Corresponds to the clSizeDepLogisticGrowth class |
  sortie.data.funcgroups.growth.SizeDepLogisticHeightOnly | Corresponds to the clSizeDepLogisticGrowth class |
  sortie.data.funcgroups.growth.StochasticGap | Corresponds to the clStochasticGapGrowth class |
  sortie.data.funcgroups.growth.WeibullClimate | Corresponds to the clWeibullClimateGrowth class |
  sortie.data.funcgroups.growth.WeibullClimateQuadrat | Corresponds to the clWeibullClimateQuadratGrowth class |
  sortie.data.funcgroups.light.AverageLight | Corresponds to the clAverageLight class |
  sortie.data.funcgroups.light.BasalAreaLight | Corresponds to the clBasalAreaLight class |
  sortie.data.funcgroups.light.ConstantGLI | Corresponds to the clConstantGLI class |
  sortie.data.funcgroups.light.GapLight | Corresponds to the clGapLight class |
  sortie.data.funcgroups.light.GLIBase | Corresponds to the class |
   sortie.data.funcgroups.light.GLILight | Corresponds to the clGLILight class |
   sortie.data.funcgroups.light.GLIMap | Corresponds to the clGLIMap class |
   sortie.data.funcgroups.light.GLIPoints | Corresponds to the clGLIPoints class |
   sortie.data.funcgroups.light.QuadratGLILight | Corresponds to the clQuadratGLILight class |
   sortie.data.funcgroups.light.SailLight | Corresponds to the clSailLight class |
  sortie.data.funcgroups.light.LightFilter | Corresponds to the clLightFilter class |
  sortie.data.funcgroups.light.StormLight | Corresponds to the clStormLight class |
  sortie.data.funcgroups.management.QualityVigorClassifier | Corresponds to the clQualityVigorClassifier class |
  sortie.data.funcgroups.mortality.AggregatedMortality | Corresponds to the clAggregatedMortality class |
  sortie.data.funcgroups.mortality.BCMort | Corresponds to the clBCMort class |
  sortie.data.funcgroups.mortality.BrowsedStochasticMortality | Corresponds to the clBrowsedStochasticMortality class |
  sortie.data.funcgroups.mortality.CompetitionMortality | Corresponds to the clCompetitionMort class |
  sortie.data.funcgroups.mortality.DensitySelfThinning | Corresponds to the clDensitySelfThinning class |
  sortie.data.funcgroups.mortality.DensitySelfThinningGompertz | Corresponds to the clDensitySelfThinningGompertz class |
  sortie.data.funcgroups.mortality.ExpResourceMortality | Corresponds to the clExpResourceMortality class |
  sortie.data.funcgroups.mortality.GMFMort | Corresponds to the clGMFMort class |
  sortie.data.funcgroups.mortality.GrowthResourceMortality | Corresponds to the clResourceMortality class |
  sortie.data.funcgroups.mortality.HeightGLIWeibullMortality | Corresponds to the clHeightGLIWeibullMortality class |
  sortie.data.funcgroups.mortality.InsectInfestationMortality | Corresponds to the clInsectInfestationMortality class |
  sortie.data.funcgroups.mortality.LogisticBiLevelMortality | Corresponds to the clLogisticBiLevelMortality class |
  sortie.data.funcgroups.mortality.NCIMort | Corresponds to the clNCIMort class |
  sortie.data.funcgroups.mortality.PostHarvestSkiddingMort | Corresponds to the clPostHarvestSkiddingMort class |
  sortie.data.funcgroups.mortality.SelfThinMort | Corresponds to the clSelfThinMort class |
  sortie.data.funcgroups.mortality.SenescenceMort | Corresponds to the clSenescenceMort class |
  sortie.data.funcgroups.mortality.StochasticBiLevelLightMortality | Corresponds to the clStochasticBiLevelMortality class |
  sortie.data.funcgroups.mortality.StochasticMort | Corresponds to the clStochasticMort class |
  sortie.data.funcgroups.mortality.SuppressionDurationMort | Corresponds to the clSuppressionDurationMort class |
  sortie.data.funcgroups.mortality.TempDepNeighborhoodSurvival | Corresponds to the clTempDependentNeighborhoodSurvival class |
  sortie.data.funcgroups.mortality.WeibullClimateSurvival | Corresponds to the clWeibullClimateSurvival class |
  sortie.data.funcgroups.mortality.WeibullSnagMort | Corresponds to the clWeibullSnagMort class |
  sortie.data.funcgroups.mortalityutilities.DeadTreeRemover | Corresponds to the clTreeRemover class |
  sortie.data.funcgroups.output.DetailedOutput | Corresponds to detailed output |
  sortie.data.funcgroups.output.ShortOutput | Corresponds to short output |
  sortie.data.funcgroups.planting.Planting | Corresponds to the clPlant class |
  sortie.data.funcgroups.Plot | Holds clPlot data |
  sortie.data.funcgroups.seedpredation.FuncResponseSeedPredation | Corresponds to the clFuncResponseSeedPredation class |
  sortie.data.funcgroups.seedpredation.FuncResponseSeedPredationLnk | Corresponds to the clFuncResponseSeedPredation class |
  sortie.data.funcgroups.seedpredation.NeighborhoodSeedPredation | Corresponds to the clNeighborhoodSeedPredation class |
  sortie.data.funcgroups.seedpredation.NeighborhoodSeedPredationLnk | Corresponds to the clNeighborhoodSeedPredation class |
  sortie.data.funcgroups.snagdynamics.SnagDecayClassDynamics | Corresponds to the clSnagDecomp class |
  sortie.data.funcgroups.statechange.PrecipitationClimateChange | Corresponds to the clClimateChange class |
  sortie.data.funcgroups.statechange.TemperatureClimateChange | Corresponds to the clClimateChange class |
  sortie.data.funcgroups.substrate.DetailedSubstrate | Corresponds to the clDetailedSubstrate class |
  sortie.data.funcgroups.substrate.Substrate | Corresponds to the clSubstrate class |
  sortie.data.funcgroups.TreeBehavior | Holds clTreePopulation data |
 sortie.tools.parfileupdater.Behavior | Represents a single behavior in the core |
 sortie.data.funcgroups.BehaviorInstantiator | Contains information for behavior instantiation |
 sortie.gui.ModelFlowSetup.BehaviorPackager | Class for tracking behaviors |
 sortie.gui.BehaviorParameterDisplay | Packages all the information needed for displaying a behavior's parameters |
 sortie.data.funcgroups.BehaviorTypeBase | This class functions as an organizer for model-level behaviors |
  sortie.data.funcgroups.AnalysisBehaviors | Manages analysis behaviors and data |
  sortie.data.funcgroups.DisperseBehaviors | This is the organizer class for all disperse behaviors |
  sortie.data.funcgroups.DisturbanceBehaviors | This class manages data for disturbance behaviors |
  sortie.data.funcgroups.EpiphyticEstablishmentBehaviors | Manages treefern establishment |
  sortie.data.funcgroups.EstablishmentBehaviors | This is the organizer class for all establishment behaviors |
  sortie.data.funcgroups.GrowthBehaviors | Controls the data relating to growth behaviors |
  sortie.data.funcgroups.LightBehaviors | Manages data for the light behaviors |
  sortie.data.funcgroups.ManagementBehaviors | Manages management behaviors and data |
  sortie.data.funcgroups.MortalityBehaviors | Manages mortality behaviors and data |
  sortie.data.funcgroups.MortalityUtilitiesBehaviors | This is the organizer class for the dead remover behavor |
  sortie.data.funcgroups.OutputBehaviors | Manages output behaviors and data |
  sortie.data.funcgroups.PlantingBehaviors | Manages planting behaviors and data |
  sortie.data.funcgroups.PlotBehaviors | Plot object |
  sortie.data.funcgroups.SeedPredationBehaviors | This class organizes the seed predation behaviors |
  sortie.data.funcgroups.SnagDynamicsBehaviors | Manages snag dynamics data and behaviors |
  sortie.data.funcgroups.StateChangeBehaviors | Manages state change behaviors |
  sortie.data.funcgroups.SubstrateBehaviors | Manages substrate data and behaviors |
  sortie.data.funcgroups.TreePopulation | This holds all data relating to the tree population |
 sortie.data.simpletypes.Cell | This class holds a set of grid cell coordinates |
 sortie.gui.ChartFrameInfo | This class bundles information and methods handy when dealing with chart frames |
 sortie.tools.batchoutput.ChartInfo | |
 ChartMouseListener | |
  sortie.gui.EpisodicEventsMouseListener | Class for interpreting mouse clicks on the chart for selecting cells for episodic event editing |
 Cloneable | |
  sortie.data.simpletypes.DataMember | An object of this class represents a data member from a grid or tree |
  sortie.data.simpletypes.DetailedGridSettings | Captures the output settings for a single grid |
  sortie.data.simpletypes.DetailedTreeSettings | This class packages together a set of tree settings |
  sortie.datavisualizer.ModelHistogramDataset | This is a hack of the HistogramDataset in JFreeChart |
  sortie.datavisualizer.XYTreeRenderer | A renderer that draws a circle at each data point |
 sortie.data.simpletypes.ComboDisplay | Combines a text description of species/type combos with the actual data, for display in lists |
 ComponentListener | |
  sortie.datavisualizer.DesktopListener | This class listens for the movement of desktop frames and resizes the desktop as necessary to make sure every part of it is reachable by scrolling |
 sortie.datavisualizer.DataFileManager | This class manages a single data file for the data visualizer |
  sortie.datavisualizer.DetailedOutputFileManager | Controls the data visualization for a single detailed output file |
  sortie.datavisualizer.ShortOutputFileManager | Manages all the data visualization for a single short output file |
 sortie.datavisualizer.DataGrapher | Objects of this class can create graphs of various kinds, given data |
 sortie.data.simpletypes.DataMemberData | Abstract class holding data member-based data, such as trees or grid values |
  sortie.data.funcgroups.GridValue | Class for holding the data for a single grid cell |
  sortie.data.funcgroups.PackageGridValue | Class for holding the data for a single package |
  sortie.data.funcgroups.Tree | Represents a single tree's data |
 sortie.datavisualizer.DataVisualizerManager | This class takes care of managing data visualization |
 sortie.data.simpletypes.DetailedOutputSettings | Base class for detailed output settings |
  sortie.data.simpletypes.DetailedGridSettings | Captures the output settings for a single grid |
  sortie.data.simpletypes.DetailedTreeSettings | This class packages together a set of tree settings |
 sortie.gui.EnhancedTableWindow | Interface for classes wishing to use the EnhancedTable class |
  sortie.gui.AllometryFunctionEditor | Makes a window for editing tree allometry functions |
  sortie.gui.GridValueEditor | Window for editing grid values in a spreadsheet-like format |
 sortie.gui.ErrorGUI | This class handles all error message writing |
 FileFilter | |
  sortie.gui.DetailedOutputFileFilter | This provides a filter for data files - .gz.tar files |
  sortie.gui.FileOpenFilter | This provides a file filter which shows all potential SORTIE file types: .xml, .hvr, .txt, and .gz.tar files |
  sortie.gui.OutFileFilter | File filter for short output files |
  sortie.gui.OutputFileFilter | This provides a filter for output files - .out and .gz.tar files |
  sortie.gui.TextFileFilter | File filter for text files |
  sortie.gui.XMLFileFilter | This filters to only XML files for file choosers |
 FocusListener | |
  sortie.gui.EnhancedTable | Provides extensions and customizations for JTable |
 sortie.data.funcgroups.Grid | This class represents grids in the core model |
 sortie.tools.parfileupdater.GroupBase | |
  sortie.tools.parfileupdater.AnalysisBehaviors | Manages analysis behaviors and data |
  sortie.tools.parfileupdater.DisperseBehaviors | This is the organizer class for all disperse behaviors |
  sortie.tools.parfileupdater.DisturbanceBehaviors | |
  sortie.tools.parfileupdater.EpiphyticEstablishmentBehaviors | |
  sortie.tools.parfileupdater.EstablishmentBehaviors | |
  sortie.tools.parfileupdater.GrowthBehaviors | |
  sortie.tools.parfileupdater.LightBehaviors | |
  sortie.tools.parfileupdater.ManagementBehaviors | |
  sortie.tools.parfileupdater.MortalityBehaviors | |
  sortie.tools.parfileupdater.MortalityUtilitiesBehaviors | |
  sortie.tools.parfileupdater.OutputBehaviors | |
  sortie.tools.parfileupdater.PlantingBehaviors | |
  sortie.tools.parfileupdater.SeedPredationBehaviors | |
  sortie.tools.parfileupdater.SnagDynamicsBehaviors | |
  sortie.tools.parfileupdater.StateChangeBehaviors | |
  sortie.tools.parfileupdater.SubstrateBehaviors | |
 sortie.gui.GUIManager | The GUI manager provides all behind-the-scenes functionality for the Main Window |
 sortie.data.funcgroups.disturbance.HarvestData | This class encapsulates the data for a single harvest event - being for one timestep, for one cut type |
 sortie.datavisualizer.HistogramBin | Copied from HistogramBin in JFreeChart by Jelai Wang with some modifications |
 sortie.parfile.Interface | Interface between the Java GUI and the C++ application core |
 sortie.gui.MainWindowStateSetter | The purpose of this class is to control the states of the main window - all the enabling and disabling, etc |
 sortie.parfile.Model | Main class that's called to start the application |
 sortie.data.simpletypes.ModelData | This is a base class for packaging data values with additional information |
  sortie.data.simpletypes.ModelEnum | Packages a data value with other information |
  sortie.data.simpletypes.ModelFloat | This class packages float values with additional information |
  sortie.data.simpletypes.ModelInt | This class packages integer values with additional data |
  sortie.data.simpletypes.ModelString | Packages a String value together with additional data |
  sortie.data.simpletypes.ModelVector | This class packages vector data with other pieces of information important to the model |
 sortie.tools.parfileupdater.ModelData | This is a base class for packaging data values with additional information |
 sortie.fileops.ModelFileFunctions | This provides common file-reading functions for reading tab-delimited files |
 sortie.data.simpletypes.ModelMessage | Structure for message passing |
 MouseListener | |
  sortie.gui.EpisodicEventsMouseListener | Class for interpreting mouse clicks on the chart for selecting cells for episodic event editing |
 MouseMotionListener | |
  sortie.gui.EpisodicEventsMouseListener | Class for interpreting mouse clicks on the chart for selecting cells for episodic event editing |
 Object | |
  sortie.fileops.TarArchive | The TarArchive class implements the concept of a tar archive |
 sortie.parfile.ParFileHelpers | |
 sortie.data.funcgroups.planting.PlantingData | This class encapsulates the data for a single planting event - being for one species, for one timestep |
 sortie.sax.SaxParseTools | |
 sortie.gui.ScheduledStormInfo | Holds data for scheduled storms grouped together |
 sortie.data.funcgroups.SpeciesSpecific | This class will package together a data member and an array of booleans on which species uses it |
 sortie.data.simpletypes.SpeciesTypeCombo | This class allows you to group together a species number and a type number into one object that can be placed in an array or vector or passed as an argument |
 sortie.data.funcgroups.Subplot | This rolls up a set of cell coordinates into a defined subplot |
 sortie.parfile.SwingWorker | |
 SwingWorker | |
  sortie.tools.batchoutput.FileAnalysisBackgroundProcess | This class performs the file analysis of output files in a background thread so that it can be reported on with the progress bar or canceled |
  sortie.tools.batchoutput.FileWritingBackgroundProcess | This class triggers the writing of the chosen output in a background thread so that it can be reported on with the progress bar or canceled |
 sortie.gui.TableData | For packaging header data in a typesafe way |
 sortie.fileops.Tarball | Functions for working with tarballs (.gz.tar files) |
 sortie.parfile.SwingWorker.ThreadVar | Class to maintain reference to current worker thread under separate synchronization control |
 Throwable | |
  sortie.data.simpletypes.ModelException | Model exception class |
 sortie.data.funcgroups.TreeOutputSaveInfo | This collects tree saving information for short output for one tree type |
 sortie.data.funcgroups.ValidationHelpers | |
 sortie.datavisualizer.XYZDataItem | Represents one (x, y, z) data item for an xyz-series |
 AbstractIntervalXYDataset | |
  sortie.datavisualizer.ModelHistogramDataset | This is a hack of the HistogramDataset in JFreeChart |
 AbstractXYItemRenderer | |
  sortie.datavisualizer.XYCellRenderer | This class fills in map cell rectangles on a plot |
  sortie.datavisualizer.XYSimpleCellRenderer | This class fills in map cell rectangles on a plot |
  sortie.datavisualizer.XYTreeRenderer | A renderer that draws a circle at each data point |
 AbstractXYZDataset | |
  sortie.datavisualizer.XYZSimpleDataset | A simple implementation of the jorg.jfree.data.xyXYZDataset interface that stores data values in arrays of bool primitives |
 ActionListener | |
  sortie.datavisualizer.DesktopListener | This class listens for the movement of desktop frames and resizes the desktop as necessary to make sure every part of it is reachable by scrolling |
  sortie.datavisualizer.DetailedOutputLegend | This extends the legend class and adds some features specific to the viewing of detailed output files - specifically the ability to step through timesteps |
  sortie.datavisualizer.GridAllSpeciesHistogramDataRequest | This controls the drawing of a histogram for all species at once for a grid for those grids that display values by species |
  sortie.datavisualizer.GridHistogramDataRequest | This controls the drawing of a histogram for a single piece of grid information |
  sortie.datavisualizer.HistogramDataRequest | This controls the drawing of a histogram for a single piece of information |
  sortie.datavisualizer.StockTableDataRequest | Writes a stock table for a detailed output file |
  sortie.datavisualizer.TreeMapCrownRadDataRequest | This class manages the data for, and draws, tree maps |
  sortie.datavisualizer.TreeMapDataRequest | This class manages the data for, and draws, tree maps |
  sortie.gui.AllometryFunctionEditor | Makes a window for editing tree allometry functions |
  sortie.gui.BatchSetup | Window for working with batch files |
  sortie.gui.DetailedOutputDeadTreeSetup | Window used by the user to set up detailed output output options for dead trees |
  sortie.gui.DetailedOutputFileCopy | This window will rename a detailed output file |
  sortie.gui.DetailedOutputFileSetup | Window that the user uses to set up detailed output options |
  sortie.gui.DetailedOutputGridSetup | Window the user uses to set up detailed output options for grids |
  sortie.gui.DetailedOutputTreeSetup | Window used by the user to set up detailed output tree output options |
  sortie.gui.EnhancedTable | Provides extensions and customizations for JTable |
  sortie.gui.EpisodicEventsEditBase | Base class for windows for episodic event editing |
   sortie.gui.HarvestEdit | Window for harvest editing |
   sortie.gui.MortalityEpisodeEdit | Window for mortality episode editing |
   sortie.gui.PlantEdit | Window for planting editing |
  sortie.gui.EpisodicEventsWindow | Displays episodic events and allows for editing |
  sortie.gui.GridCellEditor | This is a simple dialog box which will allow editing of grid cell resolution for a single grid |
  sortie.gui.HarvestEdit | Window for harvest editing |
  sortie.gui.MainWindow | Main application window |
  sortie.gui.ManageTreeMap | Allows management of tree maps |
  sortie.gui.ModelFlowSetup | Allows users to make changes to the model flow and behavior order |
  sortie.gui.ModelFlowSetup.DisplayBehaviorComboEdit | Displays an edit window for editing the tree species/type combos to which a single behavior applies |
  sortie.gui.ModelFlowSetup.DisplayComboEdit | Displays the edit window for editing behavior flow for a tree species/ type combo |
  sortie.gui.MortalityEpisodeEdit | Window for mortality episode editing |
  sortie.gui.OutputSetup | Window used by the user to start setting up run output options |
  sortie.gui.PlantEdit | Window for planting editing |
  sortie.gui.ScheduledStormSetup | This is a window allowing scheduling of storms for the storm behavior |
  sortie.gui.ShortOutputFileSetup | Window used by the user to set up summary (short) output files |
  sortie.gui.SizeClassEditor | Displays dialog for entering size class data |
  sortie.gui.SubplotEdit | Window for editing subplot information |
  sortie.gui.TreeSpeciesSetup | Dialog allowing the user to set up basic tree information |
  sortie.gui.TreeSpeciesSetup.CopySpeciesEditor | This class creates an interface for copying species |
  sortie.tools.batchoutput.BatchOptionsDialog | This class collects options needed for a data request for batch writing |
  sortie.tools.batchoutput.FileChoosingWindow | Shows the window for choosing a set of detailed output files - step 1 of the wizard |
  sortie.tools.batchoutput.OptionChoosingWindow | Shows the window for choosing save options - step 2 of the wizard |
  sortie.tools.batchoutput.ProgressDialog | A small progress dialog to inform the user of file option extraction progress |
 ChangeListener | |
  sortie.gui.EpisodicEventsWindow | Displays episodic events and allows for editing |
 DefaultHandler | |
  sortie.datavisualizer.DetailedOutputFileSetupParseHandler | Plugs into the Xerces SAX parser to handle the incoming data when the detailed output setup XML file is parsed |
  sortie.datavisualizer.DetailedOutputTimestepParseHandler | An object of this class will parse detailed output timestep files and pass the data to a DetailedOutputFileManager object |
  sortie.sax.ParameterFileParser | SAX parameter file parse handler |
  sortie.tools.parfileupdater.OldParFileParser | SAX parameter file parse handler |
 Font | |
  sortie.gui.SortieFont | The common font for all GUI elements |
 Icon | |
  sortie.gui.ModelIcon | Creates different icons needed by the model |
 InternalFrameListener | |
  sortie.gui.MainWindow | Main application window |
 IntervalXYDataset | |
  sortie.datavisualizer.ModelHistogramDataset | This is a hack of the HistogramDataset in JFreeChart |
 JComboBox | |
  sortie.gui.SORTIEComboBox< T > | Improves the basic combo box by allowing the popup area to be bigger than the box itself |
 JDialog | |
  sortie.gui.AllometryFunctionEditor | Makes a window for editing tree allometry functions |
  sortie.gui.BatchSetup | Window for working with batch files |
  sortie.gui.DetailedOutputDeadTreeSetup | Window used by the user to set up detailed output output options for dead trees |
  sortie.gui.DetailedOutputFileSetup | Window that the user uses to set up detailed output options |
  sortie.gui.DetailedOutputGridSetup | Window the user uses to set up detailed output options for grids |
  sortie.gui.DetailedOutputTreeSetup | Window used by the user to set up detailed output tree output options |
  sortie.gui.Diam10Edit | For editing initial diam10s for planting |
  sortie.gui.DisplayBehaviorComboEdit | Displays an edit window for editing the tree species/type combos to which a single behavior applies |
  sortie.gui.EpisodicEventsEditBase | Base class for windows for episodic event editing |
  sortie.gui.EpisodicEventsWindow | Displays episodic events and allows for editing |
  sortie.gui.GridCellEditor | This is a simple dialog box which will allow editing of grid cell resolution for a single grid |
  sortie.gui.GridSetup | Displays grid settings for editing |
  sortie.gui.GridValueEditor | Window for editing grid values in a spreadsheet-like format |
  sortie.gui.HarvestInterfaceSetup | This is a window allowing setup of the Harvest Interface behavior |
  sortie.gui.HarvestInterfaceSetup.FileColumnsChooser | Dialog for choosing new file columns |
  sortie.gui.ManageTreeMap | Allows management of tree maps |
  sortie.gui.ModelFlowSetup | Allows users to make changes to the model flow and behavior order |
  sortie.gui.ModelFlowSetup.DisplayBehaviorComboEdit | Displays an edit window for editing the tree species/type combos to which a single behavior applies |
  sortie.gui.ModelFlowSetup.DisplayComboEdit | Displays the edit window for editing behavior flow for a tree species/ type combo |
  sortie.gui.OutputSetup | Window used by the user to start setting up run output options |
  sortie.gui.ParameterEdit | Window used to trigger the parameter editing process |
  sortie.gui.ScheduledStormSetup | This is a window allowing scheduling of storms for the storm behavior |
  sortie.gui.ShortOutputFileSetup | Window used by the user to set up summary (short) output files |
  sortie.gui.SizeClassEditor | Displays dialog for entering size class data |
  sortie.gui.SubplotEdit | Window for editing subplot information |
  sortie.gui.TreeSpeciesSetup | Dialog allowing the user to set up basic tree information |
  sortie.gui.TreeSpeciesSetup.CopySpeciesEditor | This class creates an interface for copying species |
  sortie.tools.batchoutput.BatchOptionsDialog | This class collects options needed for a data request for batch writing |
  sortie.tools.batchoutput.FileChoosingWindow | Shows the window for choosing a set of detailed output files - step 1 of the wizard |
  sortie.tools.batchoutput.OptionChoosingWindow | Shows the window for choosing save options - step 2 of the wizard |
  sortie.tools.batchoutput.ProgressDialog | A small progress dialog to inform the user of file option extraction progress |
 JFileChooser | |
  sortie.gui.ModelFileChooser | Manages directories for SORTIE |
 JFrame | |
  sortie.gui.DetailedOutputFileCopy | This window will rename a detailed output file |
  sortie.gui.MainWindow | Main application window |
 JInternalFrame | |
  sortie.datavisualizer.Legend | This is an internal frame which displays a color legend for species-based charts |
   sortie.datavisualizer.DetailedOutputLegend | This extends the legend class and adds some features specific to the viewing of detailed output files - specifically the ability to step through timesteps |
  sortie.datavisualizer.ModelInternalFrame | Ensures consistent behavior across graph windows |
 JLabel | |
  sortie.gui.SortieLabel | Wrapper class for labels which set them up with the correct font |
 JMenuItem | |
  sortie.gui.SortieMenuItem | This class wraps the JMenuItem class to set some things we always want to set in the constructor as a convenience |
 JPanel | |
  sortie.gui.OKCancelButtonPanel | A panel containing OK, Cancel, and Help buttons |
 JTable | |
  sortie.gui.EnhancedTable | Provides extensions and customizations for JTable |
 JTextArea | |
  sortie.gui.MultilineLabel | Renders a multi-line "JLabel" |
 MouseAdapter | |
  sortie.tools.batchoutput.PopupListener | |
 PropertyChangeListener | |
  sortie.tools.batchoutput.ProgressChangeListener | This class listens for published progress reports and updates the progress dialog accordingly |
 TreeSelectionListener | |
  sortie.gui.ModelFlowSetup | Allows users to make changes to the model flow and behavior order |
 XYItemRenderer | |
  sortie.datavisualizer.XYCellRenderer | This class fills in map cell rectangles on a plot |
  sortie.datavisualizer.XYSimpleCellRenderer | This class fills in map cell rectangles on a plot |
  sortie.datavisualizer.XYTreeRenderer | A renderer that draws a circle at each data point |
 XYZDataset | |
  sortie.datavisualizer.XYZSimpleDataset | A simple implementation of the jorg.jfree.data.xyXYZDataset interface that stores data values in arrays of bool primitives |
 XYZToolTipGenerator | |
  sortie.datavisualizer.XYCellRenderer.CellTooltipGenerator | Provides a more informative tooltip string for cell values |
  sortie.datavisualizer.XYTreeRenderer.TreeTooltipGenerator | Provides a more informative tooltip string for cell values |