Browsed Stochastic Mortality - Version 1.0. More...

#include <BrowsedStochasticMortality.h>

Inheritance diagram for clBrowsedStochasticMortality:

Public Member Functions
	clBrowsedStochasticMortality (clSimManager *p_oSimManager)
	Constructor. More...

	~clBrowsedStochasticMortality ()
	Destructor. More...

void	DoShellSetup (xercesc::DOMDocument *p_oDoc)
	Reads in values from the parameter file. More...

deadCode	DoMort (clTree *p_oTree, const float &fDbh, const short int &iSpecies)
	Calculates mortality. More...

Public Member Functions inherited from clMortalityBase
	clMortalityBase (clSimManager *p_oSimManager)
	Constructor. More...

virtual	~clMortalityBase ()
	Destructor. More...

void	Action ()
	Performs mortality calculations. More...

clMortalityOrg *	GetMortOrg ()
	Gets the mortality org object. More...

void	RegisterTreeDataMembers ()
	Triggers the mortality data member registrations. More...

short int	GetNewTreeInts ()
	Overridden from clBehaviorBase. More...

bool	UsesThisMortality (short int iSp, short int iTp)
	Whether or not a species/type combo uses this mortality object. More...

virtual void	PreMortCalcs (clTreePopulation *p_oPop)
	Performs calculations before any trees have been killed. More...

Public Member Functions inherited from clBehaviorBase
virtual float	GetBehaviorVersion ()
	Gets the behavior version number. More...

	clBehaviorBase (clSimManager *p_oSimManager)
	Constructor. More...

virtual	~clBehaviorBase ()
	Destructor. More...

virtual short int	ValidateVersionNumber (float fTestVersion)
	Makes sure that the version number of a file passed is between the minimum and current version numbers. More...

virtual void	SetSpeciesTypeCombos (short int iNumCombos, stcSpeciesTypeCombo *p_whatCombos)
	Sets the species/type combos for a behavior. More...

virtual void	SetNameData (std::string sNameString)
	Sets the string for the parameter file behavior. More...

virtual short int	GetNewTreeFloats ()
	Gets the number of new tree float data members this behavior wants to register. More...

virtual short int	GetNewTreeChars ()
	Gets the number of new tree character data members this behavior wants to register. More...

virtual short int	GetNewTreeBools ()
	Gets the number of new tree bool data members this behavior wants to register. More...

virtual short int	GetNumSpeciesTypeCombos ()
	Gets the number of species/type combos to which this behavior applies. More...

virtual short int	GetNumBehaviorSpecies ()
	Gets the number of unique tree species to which this behavior applies. More...

struct stcSpeciesTypeCombo	GetSpeciesTypeCombo (short int iIndex)
	Gets one of this behavior's type/species combos. More...

virtual short int	GetBehaviorSpecies (short int iIndex)
	Gets one of the behavior's species. More...

short int	GetBehaviorListNumber ()
	Gets the behavior list number for this behavior, which differentiates between multiple copies of the behavior in the behavior list. More...

void	SetBehaviorListNumber (short int iNumber)
	Sets the behavior list number for this behavior, which differentiates between multiple copies of the behavior in the behavior list. More...

std::string	FormatSpeciesTypeQueryString ()
	Formats the string for species/types query. More...

virtual DOMElement *	GetParentParametersElement (xercesc::DOMDocument *p_oDoc)
	This will get the correct set of parameters for this behavior based on the behavior list position number. More...

Public Member Functions inherited from clWorkerBase
	clWorkerBase (clSimManager *p_oSimManager)
	Constructor. More...

virtual	~clWorkerBase ()
	Destructor. More...

std::string	GetName ()
	Gets the object's namestring. More...

clSimManager *	GetSimManager ()

void	DoObjectSetup (xercesc::DOMDocument *p_oDoc, fileType iFileType)
	Triggers the setup process. More...

virtual void	TimestepCleanup ()
	Performs any necessary cleanup operations at the end of a timestep. More...

virtual void	EndOfRunCleanup ()
	Performs any necessary cleanup operations at the end of a run. More...

Protected Attributes
double *	mp_fBrowsedMortProb
	Probability of mortality when browsed - sized number of species. More...

double *	mp_fUnbrowsedMortProb
	Probability of mortality when unbrowsed - sized number of species. More...

short int **	mp_iBrowsedCodes
	Codes for "Browsed" data member. More...

short int	m_iNumSpecies
	Number of species. More...

Protected Attributes inherited from clMortalityBase
short int	m_iNumTotalSpecies
	Keep a copy for the constructor. More...

bool	m_bHooked
	Whether or not this shell object is hooked to clMortalityOrg. More...

bool **	mp_bUsesThisMortality
	2D array, species by type, of whether or not this mortality shell applies to a given species/type combo. More...

Protected Attributes inherited from clBehaviorBase
short int	m_iNumSpeciesTypeCombos
	How many type/species combos a behavior will act on. More...

short int	m_iNumBehaviorSpecies
	How many distinct species are in the combo list - important for filling species-specific values from parameter file. More...

short int *	mp_iWhatSpecies
	List of distinct species - for filling species-specific values from parameter file. More...

stcSpeciesTypeCombo *	mp_whatSpeciesTypeCombos
	Array of species/type combos that the behavior will act on. More...

short int	m_iNewTreeInts
	The number of new tree integer data members this behavior wants to add. More...

short int	m_iNewTreeFloats
	The number of new tree float data members this behavior wants to add. More...

short int	m_iNewTreeChars
	The number of new tree character data members this behavior wants to add. More...

short int	m_iNewTreeBools
	The number of new tree boolean data members this behavior wants to add. More...

short int	m_iBehaviorListNumber
	The number of this behavior in the behavior list, to differentiate between possible multiple copies of this behavior. More...

float	m_fVersionNumber
	Version number - this will be rounded to 2 digits after the decimal place. More...

std::string	m_sXMLRoot
	XML root that encloses the parameters for this behavior. More...

float	m_fMinimumVersionNumber
	Minimum version number - this behavior will run parameter data for a file marked between this number and the current version number, inclusive. More...

Protected Attributes inherited from clWorkerBase
std::string	m_sNameString
	If a behavior has registered a command line command with the sim manager, this allows it to be called. More...

clSimManager *	mp_oSimManager
	Pointer to the simulation manager object. More...

int *	mp_iAllowedFileTypes
	List of the input file types this object can handle. More...

int	m_iNumAllowedTypes
	Number of input file types this object can handle. More...

Additional Inherited Members
Protected Member Functions inherited from clMortalityBase
void	GetData (xercesc::DOMDocument *p_oDoc)
	Triggers all mortality setup. More...

void	PopulateUsesThisMortality ()
	Declares and populates the mp_bUsesThisMortality array. More...

Protected Member Functions inherited from clWorkerBase
void	AssembleFileCode (int iFileType, int iFileVersion, char *cCode)
	Creates the proper identifying filecode for an XML file. More...

Static Protected Attributes inherited from clMortalityBase
static clMortalityOrg *	mp_oMortalityOrg
	clMortalityOrg object. More...

Detailed Description

Browsed Stochastic Mortality - Version 1.0.

This evaluates mortality at a constant rate, with a separate rate for browsed and unbrowsed trees. Trees are chosen at random to die.

Browsedness is determined by the Random Browse behavior (class clRandomBrowse). This class expects that behavior to be enabled and the "Browsed" bool data member to be present for all trees to which this behavior is applied.

This class's namestring is "browsed stochastic mortshell". The parameter file call string is "BrowsedStochasticMortality".

Author: Lora E. Murphy

Edit history:
--------------—
October 20, 2011 - Wiped the slate clean for SORTIE 7.0 (LEM)

Constructor & Destructor Documentation

◆ clBrowsedStochasticMortality()

clBrowsedStochasticMortality::clBrowsedStochasticMortality ( clSimManager * p_oSimManager )

Constructor.

Parameters

p_oSimManager Sim Manager object.

◆ ~clBrowsedStochasticMortality()

clBrowsedStochasticMortality::~clBrowsedStochasticMortality ( )

Destructor.

Member Function Documentation

◆ DoMort()

deadCode clBrowsedStochasticMortality::DoMort	(	clTree *	p_oTree,
		const float &	fDbh,
		const short int &	iSpecies
	)

virtual

Calculates mortality.

This retrieves the tree's browsed status. If it is browsed, the browsed mortality probability is used. If it is unbrowsed, the unbrowsed probability is used. A random number is compared to the appropriate rate to see if the tree lives or dies.

Parameters

p_oTree	Tree being evaluated
fDbh	Tree's DBH
iSpecies	Species of the tree being evaluated

Returns: natural if the tree is to die, notdead if it lives.

Implements clMortalityBase.

◆ DoShellSetup()

void clBrowsedStochasticMortality::DoShellSetup ( xercesc::DOMDocument * p_oDoc )

virtual

Reads in values from the parameter file.

Parameters

p_oDoc DOM tree of parsed input file.

Exceptions

modelErr if the browsed behavior is missing, or if any mortality rate is not between 0 and 1.

Reimplemented from clMortalityBase.

Member Data Documentation

◆ m_iNumSpecies

short int clBrowsedStochasticMortality::m_iNumSpecies

protected

Number of species.

For destructor.

◆ mp_fBrowsedMortProb

double* clBrowsedStochasticMortality::mp_fBrowsedMortProb

protected

Probability of mortality when browsed - sized number of species.

This value comes from the parameter file as an annual probability, which is transformed in DoShellSetup() to a timestep probability.

◆ mp_fUnbrowsedMortProb

double* clBrowsedStochasticMortality::mp_fUnbrowsedMortProb

protected

Probability of mortality when unbrowsed - sized number of species.

This value comes from the parameter file as an annual probability, which is transformed in DoShellSetup() to a timestep probability.

◆ mp_iBrowsedCodes

short int** clBrowsedStochasticMortality::mp_iBrowsedCodes

protected

Codes for "Browsed" data member.

Array size is number of species by number of types.

The documentation for this class was generated from the following file:

BrowsedStochasticMortality.h

Public Member Functions

Protected Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ clBrowsedStochasticMortality()

◆ ~clBrowsedStochasticMortality()

Member Function Documentation

◆ DoMort()

◆ DoShellSetup()

Member Data Documentation

◆ m_iNumSpecies

◆ mp_fBrowsedMortProb

◆ mp_fUnbrowsedMortProb

◆ mp_iBrowsedCodes