SORTIE Core C++ Documentation
Public Member Functions | Protected Attributes | List of all members
clGermination Class Reference

Germination - version 1.0. More...

#include <Germination.h>

Inheritance diagram for clGermination:
clBehaviorBase clWorkerBase

Public Member Functions

 clGermination (clSimManager *p_oSimManager)
 Constructor. More...
 
 ~clGermination ()
 Destructor. More...
 
void GetData (xercesc::DOMDocument *p_oDoc)
 Reads in values from the parameter file. More...
 
void Action ()
 Performs germination. More...
 
- Public Member Functions inherited from clBehaviorBase
virtual float GetBehaviorVersion ()
 Gets the behavior version number. More...
 
 clBehaviorBase (clSimManager *p_oSimManager)
 Constructor. More...
 
virtual ~clBehaviorBase ()
 Destructor. More...
 
virtual short int ValidateVersionNumber (float fTestVersion)
 Makes sure that the version number of a file passed is between the minimum and current version numbers. More...
 
virtual void RegisterTreeDataMembers ()
 Registers tree data members. More...
 
virtual void SetSpeciesTypeCombos (short int iNumCombos, stcSpeciesTypeCombo *p_whatCombos)
 Sets the species/type combos for a behavior. More...
 
virtual void SetNameData (std::string sNameString)
 Sets the string for the parameter file behavior. More...
 
virtual short int GetNewTreeInts ()
 Gets the number of new tree integer data members this behavior wants to register. More...
 
virtual short int GetNewTreeFloats ()
 Gets the number of new tree float data members this behavior wants to register. More...
 
virtual short int GetNewTreeChars ()
 Gets the number of new tree character data members this behavior wants to register. More...
 
virtual short int GetNewTreeBools ()
 Gets the number of new tree bool data members this behavior wants to register. More...
 
virtual short int GetNumSpeciesTypeCombos ()
 Gets the number of species/type combos to which this behavior applies. More...
 
virtual short int GetNumBehaviorSpecies ()
 Gets the number of unique tree species to which this behavior applies. More...
 
struct stcSpeciesTypeCombo GetSpeciesTypeCombo (short int iIndex)
 Gets one of this behavior's type/species combos. More...
 
virtual short int GetBehaviorSpecies (short int iIndex)
 Gets one of the behavior's species. More...
 
short int GetBehaviorListNumber ()
 Gets the behavior list number for this behavior, which differentiates between multiple copies of the behavior in the behavior list. More...
 
void SetBehaviorListNumber (short int iNumber)
 Sets the behavior list number for this behavior, which differentiates between multiple copies of the behavior in the behavior list. More...
 
std::string FormatSpeciesTypeQueryString ()
 Formats the string for species/types query. More...
 
virtual DOMElement * GetParentParametersElement (xercesc::DOMDocument *p_oDoc)
 This will get the correct set of parameters for this behavior based on the behavior list position number. More...
 
- Public Member Functions inherited from clWorkerBase
 clWorkerBase (clSimManager *p_oSimManager)
 Constructor. More...
 
virtual ~clWorkerBase ()
 Destructor. More...
 
std::string GetName ()
 Gets the object's namestring. More...
 
clSimManagerGetSimManager ()
 
void DoObjectSetup (xercesc::DOMDocument *p_oDoc, fileType iFileType)
 Triggers the setup process. More...
 
virtual void TimestepCleanup ()
 Performs any necessary cleanup operations at the end of a timestep. More...
 
virtual void EndOfRunCleanup ()
 Performs any necessary cleanup operations at the end of a run. More...
 

Protected Attributes

clGridmp_oSeedGrid
 Pointer to the "Dispersed Seeds" grid created by disperse behaviors. More...
 
double * mp_fProportionGerminating
 Substrate proportion. More...
 
short int * mp_iSeedGridCode
 Data member codes for seed grid for number of seeds. More...
 
- Protected Attributes inherited from clBehaviorBase
short int m_iNumSpeciesTypeCombos
 How many type/species combos a behavior will act on. More...
 
short int m_iNumBehaviorSpecies
 How many distinct species are in the combo list - important for filling species-specific values from parameter file. More...
 
short int * mp_iWhatSpecies
 List of distinct species - for filling species-specific values from parameter file. More...
 
stcSpeciesTypeCombomp_whatSpeciesTypeCombos
 Array of species/type combos that the behavior will act on. More...
 
short int m_iNewTreeInts
 The number of new tree integer data members this behavior wants to add. More...
 
short int m_iNewTreeFloats
 The number of new tree float data members this behavior wants to add. More...
 
short int m_iNewTreeChars
 The number of new tree character data members this behavior wants to add. More...
 
short int m_iNewTreeBools
 The number of new tree boolean data members this behavior wants to add. More...
 
short int m_iBehaviorListNumber
 The number of this behavior in the behavior list, to differentiate between possible multiple copies of this behavior. More...
 
float m_fVersionNumber
 Version number - this will be rounded to 2 digits after the decimal place. More...
 
std::string m_sXMLRoot
 XML root that encloses the parameters for this behavior. More...
 
float m_fMinimumVersionNumber
 Minimum version number - this behavior will run parameter data for a file marked between this number and the current version number, inclusive. More...
 
- Protected Attributes inherited from clWorkerBase
std::string m_sNameString
 If a behavior has registered a command line command with the sim manager, this allows it to be called. More...
 
clSimManagermp_oSimManager
 Pointer to the simulation manager object. More...
 
int * mp_iAllowedFileTypes
 List of the input file types this object can handle. More...
 
int m_iNumAllowedTypes
 Number of input file types this object can handle. More...
 

Additional Inherited Members

- Protected Member Functions inherited from clWorkerBase
void AssembleFileCode (int iFileType, int iFileVersion, char *cCode)
 Creates the proper identifying filecode for an XML file. More...
 

Detailed Description

Germination - version 1.0.

This performs germination. For a species subjected to germination, its number of seeds is reduced to a set proportion of the total.

A fatal error is thrown if a disperse behavior is not also defined for the run.

This class's namestring and parameter call string are both "Germination". Copyright 2011 Charles D. Canham.

Author
Lora E. Murphy


Edit history:
--------------—
October 20, 2011 - Wiped the slate clean for SORTIE 7.0 (LEM)

Constructor & Destructor Documentation

◆ clGermination()

clGermination::clGermination ( clSimManager p_oSimManager)

Constructor.

Parameters
p_oSimManagerSim Manager object.

◆ ~clGermination()

clGermination::~clGermination ( )

Destructor.

Member Function Documentation

◆ Action()

void clGermination::Action ( )
virtual

Performs germination.

For each grid cell in the seed grid, the number of seeds for a germinating species is multiplied by the germinating proportion for that species. A random round is used to take care of fractional parts of seeds.

Reimplemented from clBehaviorBase.

◆ GetData()

void clGermination::GetData ( xercesc::DOMDocument *  p_oDoc)
virtual

Reads in values from the parameter file.

Parameters
p_oDocDOM tree of parsed input file.
Exceptions
modelErrif the values in proportion germinating are not between 0 and 1.

Implements clWorkerBase.

Member Data Documentation

◆ mp_fProportionGerminating

double* clGermination::mp_fProportionGerminating
protected

Substrate proportion.

Size is # total species.

◆ mp_iSeedGridCode

short int* clGermination::mp_iSeedGridCode
protected

Data member codes for seed grid for number of seeds.

Array size is # total species.

◆ mp_oSeedGrid

clGrid* clGermination::mp_oSeedGrid
protected

Pointer to the "Dispersed Seeds" grid created by disperse behaviors.


The documentation for this class was generated from the following file: