| ▼Nsortie | |
| ▼Ndata | |
| ►Nfuncgroups | |
| ►Nanalysis | |
| CBoleVolumeCalculator | Corresponds to the clBoleVolumeCalculator class |
| CCarbonValueCalculator | Corresponds to the clCarbonValueCalculator class |
| CConditOmegaCalculator | Corresponds to the clConditOmegaCalculator class |
| CDimensionAnalysis | Corresponds to the clDimensionAnalysis class |
| CFoliarChemistry | Corresponds to the clFoliarChemistry class |
| CMerchValueCalculator | Corresponds to the clMerchValueCalculator class |
| CPartitionedDBHBiomass | Corresponds to the clPartitionedBiomass class |
| CPartitionedHeightBiomass | Corresponds to the clPartitionedBiomass class |
| CRipleysKCalculator | Corresponds to the clRipleysKCalculator class |
| CStateReporter | Corresponds to the clStateReporter class |
| CStormKilledPartitionedDBHBiomass | Corresponds to the clStormKilledPartitionedBiomass class |
| CStormKilledPartitionedHeightBiomass | Corresponds to the clStormKilledPartitionedBiomass class |
| CTreeAgeCalculator | Corresponds to the clTreeAgeCalculator class |
| CVolumeCalculator | Corresponds to the clVolumeCalculator class |
| ►Ndisperse | |
| CDisperseBase | |
| CGapSpatialDisperse | Corresponds to the clSpatialDispersal class |
| CMastingNonSpatialDisperse | Corresponds to the clMastingNonSpatialDisperse class |
| CMastingSpatialDisperse | Corresponds to the clMastingSpatialDisperse class |
| CNonGapSpatialDisperse | Corresponds to the clSpatialDispersal class |
| CNonSpatialDisperse | Corresponds to the clNonSpatialDispersal class |
| CSpatialDisperseBase | Corresponds to the clSpatialDispersal class |
| CStochDoubleLogTempDepNeighDisperse | Corresponds to the clStochDoubleLogTempDepNeighDisperse class |
| CTemperatureDependentNeighborhoodDisperse | Corresponds to the clTemperatureDependentNeighborhoodDisperse class |
| ►Ndisturbance | |
| CCompetitionHarvest | Corresponds to the clCompetitionHarvest class |
| CDensDepInfestation | Corresponds to the clDensDepInfestation class |
| CEpisodicMortality | Corresponds to the clDisturbance class |
| CGeneralizedHarvestRegime | Corresponds to the clGeneralizedHarvestRegime class |
| CHarvest | Corresponds to the clDisturbance class |
| CHarvestData | This class encapsulates the data for a single harvest event - being for one timestep, for one cut type |
| CHarvestInterface | Corresponds to the clHarvestInterface class |
| CInsectInfestation | Corresponds to the clInsectInfestation class |
| CRandomBrowse | Corresponds to the clRandomBrowse class |
| CSelectionHarvest | Corresponds to the clSelectionHarvest class |
| CStorm | Corresponds to the clStorm class |
| CStormDamageApplier | Corresponds to the clStormDamageApplier class |
| CStormDamageKiller | Corresponds to the clStormKiller class |
| CStormDirectKiller | Corresponds to the clStormDirectKiller class |
| CWindstorm | Corresponds to the clWindstorm class |
| ►Nepiphyticestablishment | |
| CEpiphyticEstablishment | Corresponds to the clEpiphyticEstablishment class |
| ►Nestablishment | |
| CConspecificTreeDensitySeedSurvival | Corresponds to the clDensitySeedSurvival class |
| CDensityDependentSeedSurvival | Corresponds to the clDensitySeedSurvival class |
| CEstablishment | Corresponds to the clEstablishment class |
| CGapSubstrateSeedSurvival | Corresponds to the clSubstrateDepSeedSurvival class |
| CLightDependentSeedSurvival | Corresponds to the clLightDepSeedSurvival class |
| CMicroEstablishment | Corresponds to the clMicroEstablishment class |
| CMicrotopographicSubstrateSeedSurvival | Corresponds to the clSubstrateDepSeedSurvival class |
| CNoGapSubstrateSeedSurvival | Corresponds to the clSubstrateDepSeedSurvival class |
| CProportionalSeedSurvival | Corresponds to the clGermination class |
| CStormLightDependentSeedSurvival | Corresponds to the clLightDepSeedSurvival class |
| CSubstrateDepEstablishmentBase | |
| ►Ngrowth | |
| CAbsoluteGrowthBALimited | Corresponds to the clAbsoluteGrowth class |
| CAbsoluteGrowthRadialLimited | Corresponds to the clAbsoluteGrowth class |
| CAbsoluteUnlimited | Corresponds to the clAbsoluteGrowth class |
| CAllometricDiam | Corresponds to the clAllometricGrowthIncrementer class |
| CAllometricHeight | Corresponds to the clAllometricGrowthIncrementer class |
| CBrowsedRelativeGrowth | Corresponds to the clBrowsedRelativeGrowth class |
| CConstantBA | Corresponds to the clConstantBAGrowth class |
| CConstantRadial | Corresponds to the clConstantBAGrowth class |
| CDoubleMMRel | Corresponds to the clDoubleMMRelGrowth class |
| CLaggedPostHarvestGrowth | Corresponds to the clLaggedPostHarvestGrowth class |
| CLinearBiLevel | Corresponds to the clLinearBiLevelGrowth class |
| CLogBiLevel | Corresponds to the clLogBiLevelGrowth class |
| CLogistic | Corresponds to the clLogisticGrowth class |
| CLogisticHeightOnly | Corresponds to the clLogisticGrowth class |
| CLognormal | Corresponds to the clLognormalGrowth class |
| CLognormalHeightOnly | Corresponds to the clLognormalGrowth class |
| CMichMenNeg | Corresponds to the clMichMenNegGrowth class |
| CMichMenPhotoinhibition | Corresponds to the clMichMenPhotoinhibition class |
| CPowerHeight | Corresponds to the clPowerHeightGrowth class |
| CPRSemiStochDiamOnly | Corresponds to the clPRSemiStochGrowth class |
| CPRStormBiLevel | Corresponds to the clPRStormBiLevelGrowth class |
| CRelativeGrowthBALimited | Corresponds to the clRelativeGrowth class |
| CRelativeGrowthRadialLimited | Corresponds to the clRelativeGrowth class |
| CRelativeHeight | Corresponds to the clRelativeGrowth class |
| CRelativeUnlimited | Corresponds to the clRelativeGrowth class |
| CShadedLinearGrowth | Corresponds to the clShadedLinearGrowth class |
| CShadedLinearGrowthHeightOnly | Corresponds to the clShadedLinearGrowth class |
| CSimpleLinear | Corresponds to the clSimpleLinearGrowth class |
| CSimpleLinearHeightOnly | Corresponds to the clSimpleLinearGrowth class |
| CSizeDepLogistic | Corresponds to the clSizeDepLogisticGrowth class |
| CSizeDepLogisticHeightOnly | Corresponds to the clSizeDepLogisticGrowth class |
| CStochasticGap | Corresponds to the clStochasticGapGrowth class |
| ►Nlight | |
| CAverageLight | Corresponds to the clAverageLight class |
| CBasalAreaLight | Corresponds to the clBasalAreaLight class |
| CConstantGLI | Corresponds to the clConstantGLI class |
| CGapLight | Corresponds to the clGapLight class |
| CGLIBase | Corresponds to the class |
| CGLILight | Corresponds to the clGLILight class |
| CGLIMap | Corresponds to the clGLIMap class |
| CGLIPoints | Corresponds to the clGLIPoints class |
| CLightFilter | Corresponds to the clLightFilter class |
| CQuadratGLILight | Corresponds to the clQuadratGLILight class |
| CSailLight | Corresponds to the clSailLight class |
| CStormLight | Corresponds to the clStormLight class |
| ►Nmanagement | |
| CQualityVigorClassifier | Corresponds to the clQualityVigorClassifier class |
| ►Nmortality | |
| CAggregatedMortality | Corresponds to the clAggregatedMortality class |
| CBCMort | Corresponds to the clBCMort class |
| CBrowsedStochasticMortality | Corresponds to the clBrowsedStochasticMortality class |
| CClimateCompDepNeighborhoodSurvival | Corresponds to the clClimateCompDepNeighborhoodSurvival class |
| CCompetitionMortality | Corresponds to the clCompetitionMort class |
| CDensitySelfThinning | Corresponds to the clDensitySelfThinning class |
| CDensitySelfThinningGompertz | Corresponds to the clDensitySelfThinningGompertz class |
| CExpResourceMortality | Corresponds to the clExpResourceMortality class |
| CGMFMort | Corresponds to the clGMFMort class |
| CGrowthResourceMortality | Corresponds to the clResourceMortality class |
| CHeightGLIWeibullMortality | Corresponds to the clHeightGLIWeibullMortality class |
| CInsectInfestationMortality | Corresponds to the clInsectInfestationMortality class |
| CLogisticBiLevelMortality | Corresponds to the clLogisticBiLevelMortality class |
| CPostHarvestSkiddingMort | Corresponds to the clPostHarvestSkiddingMort class |
| CSelfThinMort | Corresponds to the clSelfThinMort class |
| CSenescenceMort | Corresponds to the clSenescenceMort class |
| CSizeDependentLogisticMortality | Corresponds to the clSizeDependentLogisticMortality class |
| CStochasticBiLevelLightMortality | Corresponds to the clStochasticBiLevelMortality class |
| CStochasticMort | Corresponds to the clStochasticMort class |
| CSuppressionDurationMort | Corresponds to the clSuppressionDurationMort class |
| CTempDepNeighborhoodSurvival | Corresponds to the clTempDependentNeighborhoodSurvival class |
| CWeibullSnagMort | Corresponds to the clWeibullSnagMort class |
| ►Nmortalityutilities | |
| CDeadTreeRemover | Corresponds to the clTreeRemover class |
| ►Nnci | |
| CCrowdingEffectDefault | This class calculates a crowding effect |
| CCrowdingEffectNoSize | This class calculates a crowding effect with no size term |
| CCrowdingEffectTempDep | This class calculates a crowding effect using the function: |
| CDamageEffectDefault | This returns the damage effect due to storms |
| CInfectionEffect | This class calculates an infection effect according to the term:
Pest Effect = a * ln(T) + b
where T is the time in years that an individual tree has been infested, and a and b are parameters |
| CInfectionEffectSizeDependent | This class calculates an infection effect according to the term:
Infection Effect = [a * ln(T) + b] * exp(-0.5*[( ((DBH-Xp)/X0) / Xb)^2]
where |
| ►CNCIEffect | This class provides a class for NCI effects with organizing information |
| Ccrowding_effect | Flag values for which crowding effect term is desired |
| Cdamage_effect | Flag values for which damage effect term is desired |
| CeffectType | Identifier for different types of effects |
| Cinfection_effect | Flag values for which infection effect term is desired |
| Cnci_term | Flag values for which NCI term is desired |
| Cnitrogen_effect | Flag values for which nitrogen effect term is desired |
| Cprecipitation_effect | Flag values for which precipitation effect term is desired |
| Cshading_effect | Flag values for which shading effect term is desired |
| Csize_effect | Flag values for which size effect term is desired |
| Ctemperature_effect | Flag values for which temperature effect term is desired |
| CNCILargerNeighbors | The NCI term is simply a count of sapling and adult neighbors with a larger DBH than the target within a certain radius, subject to a minimum value |
| CNCIMasterBase | The base for behaviors using the flexible NCI system allowing the user to choose any combination of multiplicative effects |
| CNCIMasterGrowth | Corresponds to the clNCIMasterGrowth class |
| CNCIMasterMortality | Corresponds to the clNCIGrowth class |
| CNCIMasterQuadratGrowth | Corresponds to the clNCIMasterQuadratGrowth class |
| CNCINeighborBA | The NCI term is the sum of BA of neighbors |
| CNCITermBARatio | NCIi is calculated using basal area ratio |
| CNCITermBARatioDBHDefault | NCIi is calculated using basal area ratio, using a single default value for target tree size |
| CNCITermDefault | NCIi is calculated as follows (simplifying the notation):
NCIi = Σ λk((DBHk/q)α/distanceβ)
where:
- we're summing over k = 0 to N neighbors greater than the minimum
neighbor DBH
- α is the neighbor DBH effect parameter
- β is the neighbor distance effect parameter
- DBH is of the target tree, in cm
- q is the DBH divisor parameter
- DBHk is the DBH of the kth neighbor, in meters
- γ is the size sensitivity to NCI parameter
- λk is the NCI lambda parameter for the species
of the kth neighbor
- distance is distance from target to neighbor, in meters
|
| CNCITermNCIBARatio | NCIi is calculated as follows (simplifying the notation):
NCIi = Σ λk((DBHk)α/distanceβ)
where:
- we're summing over k = 0 to N neighbors greater than the minimum
neighbor DBH
- α is the neighbor DBH effect parameter
- β is the neighbor distance effect parameter
- DBH is of the target tree, in cm
- DBHk is the DBH of the kth neighbor, in meters
- γ is the size sensitivity to NCI parameter
- λk is the NCI lambda parameter for the species
of the kth neighbor
- distance is distance from target to neighbor, in meters
|
| CNCITermNCIBARatioDBHDefault | NCIi is calculated as follows (simplifying the notation):
NCIi = Σ λk((DBHk)α/distanceβ)
where:
- we're summing over k = 0 to N neighbors greater than the minimum
neighbor DBH
- α is the neighbor DBH effect parameter
- β is the neighbor distance effect parameter
- DBH is of the target tree, in cm
- DBHk is the DBH of the kth neighbor, in meters
- γ is the size sensitivity to NCI parameter
- λk is the NCI lambda parameter for the species
of the kth neighbor
- distance is distance from target to neighbor, in meters
|
| CNCITermNCITempDepBARatio | NCIi is calculated as follows (simplifying the notation):
NCIi = Σ λk((DBHk)α/distanceβ)
where:
- we're summing over k = 0 to N neighbors greater than the minimum
neighbor DBH
- α is the neighbor DBH effect parameter
- β is the neighbor distance effect parameter
- DBH is of the target tree, in cm
- DBHk is the DBH of the kth neighbor, in meters
- γ is the size sensitivity to NCI parameter
- λk is the NCI lambda parameter for the species
of the kth neighbor
- distance is distance from target to neighbor, in meters
|
| CNCITermNCITempDepBARatioDBHDefault | NCIi is calculated as follows (simplifying the notation):
NCIi = Σ λk((DBHk)α/distanceβ)
where:
- we're summing over k = 0 to N neighbors greater than the minimum
neighbor DBH
- α is the neighbor DBH effect parameter
- β is the neighbor distance effect parameter
- DBH is of the target tree, in cm
- DBHk is the DBH of the kth neighbor, in meters
- γ is the size sensitivity to NCI parameter
- λk is the NCI lambda parameter for the species
of the kth neighbor
- distance is distance from target to neighbor, in meters
|
| CNCITermWithNeighborDamage | NCIi is calculated as follows (simplifying the notation):
NCIi = Σ η λk((DBHk/q)α/distanceβ)
where:
- we're summing over k = 0 to N neighbors greater than the minimum
neighbor DBH
- η is the storm damage parameter of the target,
depending on the damage status. It’s 1 if the neighbor is undamaged.
- α is the neighbor DBH effect parameter
- β is the neighbor distance effect parameter
- DBH is of the target tree, in cm
- q is the DBH divisor parameter
- DBHk is the DBH of the kth neighbor, in meters
- γ is the size sensitivity to NCI parameter
- λk is the NCI lambda parameter for the species
of the kth neighbor
- distance is distance from target to neighbor, in meters
Note that eta is per target species, not per neighbor (like lambda) |
| CNCIWithSeedlings | This is an NCI term which allows seedlings to compete |
| CNitrogenEffectGaussian | This class calculates a nitrogen effect according to the term:
Nitrogen Effect = exp(-0.5*((NDEP - X0) / Xb)2)
where: |
| CPrecipitationEffectDoubleLogistic | This represents precipitation effect in NCI behaviors calculated with a double logistic function |
| CPrecipitationEffectWeibull | This represents the default Weibull precipitation effect in NCI growth |
| CShadingDefault | This represents the default shading effect in NCI growth |
| CSizeEffectCompoundExpInf | This represents the default size effect in NCI growth |
| CSizeEffectCompoundExponential | This represents the default size effect in NCI growth |
| CSizeEffectDefault | This represents the default size effect in NCI growth |
| CSizeEffectLowerBounded | This represents the default size effect in NCI growth |
| CSizeEffectPowerFunction | This represents the default size effect in NCI growth |
| CSizeEffectShiftedLogInf | This represents a size effect in NCI growth that uses a shifted lognormal function |
| CSizeEffectShiftedLognormal | This represents a size effect in NCI growth that uses a shifted lognormal function |
| CTemperatureEffectDoubleLogistic | This represents temperature effect in NCI behaviors calculated with a double logistic function |
| CTemperatureEffectWeibull | This represents the default Weibull temperature effect in NCI behaviors |
| ►Noutput | |
| CDetailedOutput | Corresponds to detailed output |
| CShortOutput | Corresponds to short output |
| ►Nplanting | |
| CPlanting | Corresponds to the clPlant class |
| CPlantingData | This class encapsulates the data for a single planting event - being for one species, for one timestep |
| ►Nseedpredation | |
| CFuncResponseSeedPredation | Corresponds to the clFuncResponseSeedPredation class |
| CFuncResponseSeedPredationLnk | Corresponds to the clFuncResponseSeedPredation class |
| CNeighborhoodSeedPredation | Corresponds to the clNeighborhoodSeedPredation class |
| CNeighborhoodSeedPredationLnk | Corresponds to the clNeighborhoodSeedPredation class |
| ►Nsnagdynamics | |
| CSnagDecayClassDynamics | Corresponds to the clSnagDecomp class |
| ►Nstatechange | |
| CClimateImporter | Corresponds to the clClimateImporter class |
| CPrecipitationClimateChange | Corresponds to the clClimateChange class |
| CSeasonalWaterDeficit | Corresponds to the clSeasonalWaterDeficit class |
| CTemperatureClimateChange | Corresponds to the clClimateChange class |
| ►Nsubstrate | |
| CDetailedSubstrate | Corresponds to the clDetailedSubstrate class |
| CSubstrate | Corresponds to the clSubstrate class |
| CAllometry | This holds all data relating to allometry |
| CAnalysisBehaviors | Manages analysis behaviors and data |
| ►CBehavior | Represents a single behavior in the core |
| CsetupType | How this behavior's setup interface is handled |
| CBehaviorInstantiator | Contains information for behavior instantiation |
| CBehaviorTypeBase | This class functions as an organizer for model-level behaviors |
| CDisperseBehaviors | This is the organizer class for all disperse behaviors |
| CDisturbanceBehaviors | This class manages data for disturbance behaviors |
| CEpiphyticEstablishmentBehaviors | Manages treefern establishment |
| CEstablishmentBehaviors | This is the organizer class for all establishment behaviors |
| CGrid | This class represents grids in the core model |
| CGridValue | Class for holding the data for a single grid cell |
| CGrowthBehaviors | Controls the data relating to growth behaviors |
| CLightBehaviors | Manages data for the light behaviors |
| CManagementBehaviors | Manages management behaviors and data |
| CMortalityBehaviors | Manages mortality behaviors and data |
| CMortalityUtilitiesBehaviors | This is the organizer class for the dead remover behavor |
| COutputBehaviors | Manages output behaviors and data |
| CPackageGridValue | Class for holding the data for a single package |
| CPlantingBehaviors | Manages planting behaviors and data |
| CPlot | Holds clPlot data |
| CPlotBehaviors | Plot object |
| CSeedPredationBehaviors | This class organizes the seed predation behaviors |
| CSnagDynamicsBehaviors | Manages snag dynamics data and behaviors |
| CSpeciesSpecific | This class will package together a data member and an array of booleans on which species uses it |
| CStateChangeBehaviors | Manages state change behaviors |
| CSubplot | This rolls up a set of cell coordinates into a defined subplot |
| CSubstrateBehaviors | Manages substrate data and behaviors |
| CTree | Represents a single tree's data |
| CTreeBehavior | Holds clTreePopulation data |
| CTreeOutputSaveInfo | This collects tree saving information for short output for one tree type |
| CTreePopulation | This holds all data relating to the tree population |
| CValidationHelpers | |
| ►Nsimpletypes | |
| CCell | This class holds a set of grid cell coordinates |
| CComboDisplay | Combines a text description of species/type combos with the actual data, for display in lists |
| CDataMember | An object of this class represents a data member from a grid or tree |
| CDataMemberData | Abstract class holding data member-based data, such as trees or grid values |
| CDetailedGridSettings | Captures the output settings for a single grid |
| CDetailedOutputSettings | Base class for detailed output settings |
| CDetailedTreeSettings | This class packages together a set of tree settings |
| CModelData | This is a base class for packaging data values with additional information |
| CModelEnum | Packages a data value with other information |
| CModelException | Model exception class |
| CModelFloat | This class packages float values with additional information |
| CModelInt | This class packages integer values with additional data |
| CModelMessage | Structure for message passing |
| CModelString | Packages a String value together with additional data |
| CModelVector | This class packages vector data with other pieces of information important to the model |
| CSpeciesTypeCombo | This class allows you to group together a species number and a type number into one object that can be placed in an array or vector or passed as an argument |
| ▼Ndatavisualizer | |
| CCarbonValueDataRequest | Produces a table of carbon value results |
| CDataFileManager | This class manages a single data file for the data visualizer |
| CDataGrapher | Objects of this class can create graphs of various kinds, given data |
| CDataRequest | This class is used by the DetailedOutputFileManager class to manage open requests for data |
| CDataVisualizerManager | This class takes care of managing data visualization |
| CDesktopListener | This class listens for the movement of desktop frames and resizes the desktop as necessary to make sure every part of it is reachable by scrolling |
| CDetailedOutputFileManager | Controls the data visualization for a single detailed output file |
| CDetailedOutputFileSetupParseHandler | Plugs into the Xerces SAX parser to handle the incoming data when the detailed output setup XML file is parsed |
| CDetailedOutputLegend | This extends the legend class and adds some features specific to the viewing of detailed output files - specifically the ability to step through timesteps |
| CDetailedOutputTimestepParseHandler | An object of this class will parse detailed output timestep files and pass the data to a DetailedOutputFileManager object |
| CFoliarChemistryLineGraphDataRequest | Produces a line graph of foliar chemistry results (one component - i.e |
| CFoliarChemistryTableDataRequest | Produces a table of foliar chemistry results |
| CGridAllSpeciesHistogramDataRequest | This controls the drawing of a histogram for all species at once for a grid for those grids that display values by species |
| CGridDataRequest | Draws a map for a single grid's data member |
| CGridHistogramDataRequest | This controls the drawing of a histogram for a single piece of grid information |
| CHarvestDataRequest | Produces a table of harvest or mortality episode results |
| CHistogramBin | Copied from HistogramBin in JFreeChart by Jelai Wang with some modifications |
| CHistogramDataRequest | This controls the drawing of a histogram for a single piece of information |
| CLegend | This is an internal frame which displays a color legend for species-based charts |
| CLineGraphDataRequest | Creates different types of line graphs for detailed output files |
| CMerchValueDataRequest | Produces a table of merchantable timber value results |
| CModelHistogramDataset | This is a hack of the HistogramDataset in JFreeChart |
| CModelInternalFrame | Ensures consistent behavior across graph windows |
| CNoSpeciesLegend | This is a class for displaying a color legend for non-species-based charts |
| COverviewTableDataRequest | Writes an overview table for a detailed output file (basal area and density for each life history stage) |
| CPartitionedBiomassLineGraphDataRequest | Produces a line graph of partitioned biomass results (one component - i.e |
| CPartitionedBiomassTableDataRequest | Produces a table of partitioned biomass results |
| CRelativeNeighborhoodDensityDataRequest | Produces a line graph of Relative Neighborhood Density grid results |
| CRipleysKDataRequest | Produces a line graph of Ripley's K results |
| CSeedTableDataRequest | Produces a table of dispersed seeds |
| CShortOutputFileManager | Manages all the data visualization for a single short output file |
| CStandTableDataRequest | Writes a stand table for a detailed output file (basal area or density for each life history stage throughout the run) |
| CStateVariableTableDataRequest | Produces a table of state variable results |
| CStockTableDataRequest | Writes a stock table for a detailed output file |
| CStormDataRequest | Produces a table of storm results |
| CStormKilledPartitionedBiomassDataRequest | Produces a table of partitioned biomass results |
| CSubstrateLineGraphDataRequest | Produces a line graph of substrate results |
| CTreeListWriter | This class will write a complete tree list for any desired time step |
| CTreeMapCrownRadDataRequest | This class manages the data for, and draws, tree maps |
| CTreeMapDataRequest | This class manages the data for, and draws, tree maps |
| CWindstormDataRequest | Produces a table of windstorm results |
| ►CXYCellRenderer | This class fills in map cell rectangles on a plot |
| CCellTooltipGenerator | Provides a more informative tooltip string for cell values |
| CXYSimpleCellRenderer | This class fills in map cell rectangles on a plot |
| ►CXYTreeRenderer | A renderer that draws a circle at each data point |
| CTreeTooltipGenerator | Provides a more informative tooltip string for cell values |
| CXYZDataItem | Represents one (x, y, z) data item for an xyz-series |
| CXYZSimpleDataset | A simple implementation of the jorg.jfree.data.xyXYZDataset interface that stores data values in arrays of bool primitives |
| ▼Nfileops | |
| CModelFileFunctions | This provides common file-reading functions for reading tab-delimited files |
| CTarArchive | The TarArchive class implements the concept of a tar archive |
| CTarball | Functions for working with tarballs (.gz.tar files) |
| ▼Ngui | |
| ►Nbehaviorsetup | |
| CAllometryFunctionEditor | Makes a window for editing tree allometry functions |
| CAllometryParameterEdit | This class displays the dialog for editing Allometry parameters, with a button for editing the function choices |
| CBehaviorParameterDisplay | Packages all the information needed for displaying a behavior's parameters |
| CClimateImporterEditor | Makes a window for editing climate importer data |
| CDefaultBehaviorParameterEdit | This class displays the default dialog for editing the parameters for a single behavior |
| CEnhancedTable | Provides extensions and customizations for JTable |
| CEnhancedTableWindow | Interface for classes wishing to use the EnhancedTable class |
| ►CHarvestInterfaceSetup | This is a window allowing setup of the Harvest Interface behavior |
| CFileColumnsChooser | Dialog for choosing new file columns |
| CNCIEffectsEditor | Makes a window for editing NCI functions |
| CNCIParameterEdit | This class displays the dialog for editing NCI parameters, with a button for editing the function choices |
| CParameterEdit | Window used to trigger the parameter editing process |
| CQuickScrollingPanel | This class creates a JPanel that scrolls at a normal speed through a JScrollPane |
| CStormParameterEdit | This class displays the dialog for editing Storm parameters, with a button for scheduling storms |
| CTableData | For packaging header data in a typesafe way |
| ►Ncomponents | |
| CFileOpenFilter | This provides a file filter which shows all potential SORTIE file types: .xml, .hvr, .txt, and .gz.tar files |
| CModelFileChooser | Manages directories for SORTIE |
| CModelIcon | Creates different icons needed by the model |
| CMultilineLabel | Renders a multi-line "JLabel" |
| COKCancelButtonPanel | A panel containing OK, Cancel, and Help buttons |
| COutFileFilter | File filter for short output files |
| COutputFileFilter | This provides a filter for output files - .out and .gz.tar files |
| CSORTIEComboBox | Improves the basic combo box by allowing the popup area to be bigger than the box itself |
| CSortieFont | The common font for all GUI elements |
| CSortieLabel | Wrapper class for labels which set them up with the correct font |
| CSortieMenuItem | This class wraps the JMenuItem class to set some things we always want to set in the constructor as a convenience |
| CTextFileFilter | File filter for text files |
| CXMLFileFilter | This filters to only XML files for file choosers |
| ►Nharvepplant | |
| CDiam10Edit | For editing initial diam10s for planting |
| ►CDisplayWindowBase | Provides a base class with common methods for display of current specifications for harvest, episodic mortality, and planting |
| CwindowType | |
| CEditWindowBase | Base class for windows for disturbance and planting event editing |
| CEpisodicEventsMouseListener | Class for interpreting mouse clicks on the chart for selecting cells for episodic event editing |
| CHarvestDisplayWindow | Displays harvest events and allows for editing |
| CHarvestEdit | Window for harvest editing |
| CMortalityEpisodeDisplayWindow | Displays episodic events and allows for editing |
| CMortalityEpisodeEdit | Window for mortality episode editing |
| CPlantEdit | Window for planting editing |
| CPlantingDisplayWindow | Displays planting events and allows for editing |
| ►Nmodelflowsetup | |
| CBehaviorPackager | Class for tracking behaviors |
| CDisplayBehaviorComboEdit | Displays an edit window for editing the tree species/type combos to which a single behavior applies |
| CDisplayBehaviorEdit | Displays the edit window for editing behavior order |
| CDisplayComboEdit | Displays the edit window for editing behavior flow for a tree species/ type combo |
| CModelFlowSetup | Allows users to make changes to the model flow and behavior order |
| CBatchSetup | Window for working with batch files |
| CChartFrameInfo | This class bundles information and methods handy when dealing with chart frames |
| CDetailedOutputDeadTreeSetup | Window used by the user to set up detailed output output options for dead trees |
| CDetailedOutputFileCopy | This window will rename a detailed output file |
| CDetailedOutputFileFilter | This provides a filter for data files - .gz.tar files |
| CDetailedOutputFileSetup | Window that the user uses to set up detailed output options |
| CDetailedOutputGridSetup | Window the user uses to set up detailed output options for grids |
| CDetailedOutputTreeSetup | Window used by the user to set up detailed output tree output options |
| CErrorGUI | This class handles all error message writing |
| CGridCellEditor | This is a simple dialog box which will allow editing of grid cell resolution for a single grid |
| CGridSetup | Displays grid settings for editing |
| CGridValueEditor | Window for editing grid values in a spreadsheet-like format |
| CGUIManager | The GUI manager provides all behind-the-scenes functionality for the Main Window |
| CMainWindow | Main application window |
| CMainWindowStateSetter | The purpose of this class is to control the states of the main window - all the enabling and disabling, etc |
| CManageTreeMap | Allows management of tree maps |
| COutputSetup | Window used by the user to start setting up run output options |
| CScheduledStormInfo | Holds data for scheduled storms grouped together |
| CScheduledStormSetup | This is a window allowing scheduling of storms for the storm behavior |
| CShortOutputFileSetup | Window used by the user to set up summary (short) output files |
| CSizeClassEditor | Displays dialog for entering size class data |
| CSubplotEdit | Window for editing subplot information |
| ►CTreeSpeciesSetup | Dialog allowing the user to set up basic tree information |
| CCopySpeciesEditor | This class creates an interface for copying species |
| ▼Nparfile | |
| CInterface | Interface between the Java GUI and the C++ application core |
| CModel | Main class that's called to start the application |
| CParFileHelpers | |
| ►CSwingWorker | |
| CThreadVar | Class to maintain reference to current worker thread under separate synchronization control |
| ▼Nsax | |
| CParameterFileParser | SAX parameter file parse handler |
| CSaxParseTools | |
| ▼Ntools | |
| ►Nbatchoutput | |
| CBatchDetailedOutput | This class allows the user to set up batch extraction of data from detailed output files |
| CBatchOptionsDialog | This class collects options needed for a data request for batch writing |
| CChartInfo | |
| CFileAnalysisBackgroundProcess | This class performs the file analysis of output files in a background thread so that it can be reported on with the progress bar or canceled |
| CFileChoosingWindow | Shows the window for choosing a set of detailed output files - step 1 of the wizard |
| CFileWritingBackgroundProcess | This class triggers the writing of the chosen output in a background thread so that it can be reported on with the progress bar or canceled |
| COptionChoosingWindow | Shows the window for choosing save options - step 2 of the wizard |
| CPopupListener | |
| CProgressChangeListener | This class listens for published progress reports and updates the progress dialog accordingly |
| CProgressDialog | A small progress dialog to inform the user of file option extraction progress |
| ►Nparfileupdater | |
| CAnalysisBehaviors | Manages analysis behaviors and data |
| CBehavior | Represents a single behavior in the core |
| CDisperseBehaviors | This is the organizer class for all disperse behaviors |
| CDisturbanceBehaviors | |
| CEpiphyticEstablishmentBehaviors | |
| CEstablishmentBehaviors | |
| CGroupBase | |
| CGrowthBehaviors | |
| CLightBehaviors | |
| CManagementBehaviors | |
| CModelData | This is a base class for packaging data values with additional information |
| CMortalityBehaviors | |
| CMortalityUtilitiesBehaviors | |
| COldParFileParser | SAX parameter file parse handler |
| COutputBehaviors | |
| CPlantingBehaviors | |
| CSeedPredationBehaviors | |
| CSnagDynamicsBehaviors | |
| CStateChangeBehaviors | |
| CSubstrateBehaviors | |
