Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 1234]

►CActionListener
►Csortie.datavisualizer.DataRequest	This class is used by the DetailedOutputFileManager class to manage open requests for data
Csortie.datavisualizer.CarbonValueDataRequest	Produces a table of carbon value results
Csortie.datavisualizer.FoliarChemistryLineGraphDataRequest	Produces a line graph of foliar chemistry results (one component - i.e
Csortie.datavisualizer.FoliarChemistryTableDataRequest	Produces a table of foliar chemistry results
Csortie.datavisualizer.GridAllSpeciesHistogramDataRequest	This controls the drawing of a histogram for all species at once for a grid for those grids that display values by species
Csortie.datavisualizer.GridDataRequest	Draws a map for a single grid's data member
Csortie.datavisualizer.GridHistogramDataRequest	This controls the drawing of a histogram for a single piece of grid information
Csortie.datavisualizer.HarvestDataRequest	Produces a table of harvest or mortality episode results
Csortie.datavisualizer.HistogramDataRequest	This controls the drawing of a histogram for a single piece of information
Csortie.datavisualizer.LineGraphDataRequest	Creates different types of line graphs for detailed output files
Csortie.datavisualizer.MerchValueDataRequest	Produces a table of merchantable timber value results
Csortie.datavisualizer.OverviewTableDataRequest	Writes an overview table for a detailed output file (basal area and density for each life history stage)
Csortie.datavisualizer.PartitionedBiomassLineGraphDataRequest	Produces a line graph of partitioned biomass results (one component - i.e
Csortie.datavisualizer.PartitionedBiomassTableDataRequest	Produces a table of partitioned biomass results
Csortie.datavisualizer.RelativeNeighborhoodDensityDataRequest	Produces a line graph of Relative Neighborhood Density grid results
Csortie.datavisualizer.RipleysKDataRequest	Produces a line graph of Ripley's K results
Csortie.datavisualizer.SeedTableDataRequest	Produces a table of dispersed seeds
Csortie.datavisualizer.StandTableDataRequest	Writes a stand table for a detailed output file (basal area or density for each life history stage throughout the run)
Csortie.datavisualizer.StateVariableTableDataRequest	Produces a table of state variable results
Csortie.datavisualizer.StockTableDataRequest	Writes a stock table for a detailed output file
Csortie.datavisualizer.StormDataRequest	Produces a table of storm results
Csortie.datavisualizer.StormKilledPartitionedBiomassDataRequest	Produces a table of partitioned biomass results
Csortie.datavisualizer.SubstrateLineGraphDataRequest	Produces a line graph of substrate results
Csortie.datavisualizer.TreeListWriter	This class will write a complete tree list for any desired time step
Csortie.datavisualizer.TreeMapCrownRadDataRequest	This class manages the data for, and draws, tree maps
Csortie.datavisualizer.TreeMapDataRequest	This class manages the data for, and draws, tree maps
Csortie.datavisualizer.WindstormDataRequest	Produces a table of windstorm results
Csortie.datavisualizer.OverviewTableDataRequest	Writes an overview table for a detailed output file (basal area and density for each life history stage)
Csortie.datavisualizer.StandTableDataRequest	Writes a stand table for a detailed output file (basal area or density for each life history stage throughout the run)
Csortie.gui.GridValueEditor	Window for editing grid values in a spreadsheet-like format
Csortie.tools.batchoutput.BatchDetailedOutput	This class allows the user to set up batch extraction of data from detailed output files
►Csortie.data.funcgroups.Behavior	Represents a single behavior in the core
Csortie.data.funcgroups.Allometry	This holds all data relating to allometry
Csortie.data.funcgroups.analysis.BoleVolumeCalculator	Corresponds to the clBoleVolumeCalculator class
Csortie.data.funcgroups.analysis.CarbonValueCalculator	Corresponds to the clCarbonValueCalculator class
Csortie.data.funcgroups.analysis.ConditOmegaCalculator	Corresponds to the clConditOmegaCalculator class
Csortie.data.funcgroups.analysis.DimensionAnalysis	Corresponds to the clDimensionAnalysis class
Csortie.data.funcgroups.analysis.FoliarChemistry	Corresponds to the clFoliarChemistry class
Csortie.data.funcgroups.analysis.MerchValueCalculator	Corresponds to the clMerchValueCalculator class
Csortie.data.funcgroups.analysis.PartitionedDBHBiomass	Corresponds to the clPartitionedBiomass class
Csortie.data.funcgroups.analysis.PartitionedHeightBiomass	Corresponds to the clPartitionedBiomass class
Csortie.data.funcgroups.analysis.RipleysKCalculator	Corresponds to the clRipleysKCalculator class
Csortie.data.funcgroups.analysis.StateReporter	Corresponds to the clStateReporter class
Csortie.data.funcgroups.analysis.StormKilledPartitionedDBHBiomass	Corresponds to the clStormKilledPartitionedBiomass class
Csortie.data.funcgroups.analysis.StormKilledPartitionedHeightBiomass	Corresponds to the clStormKilledPartitionedBiomass class
Csortie.data.funcgroups.analysis.TreeAgeCalculator	Corresponds to the clTreeAgeCalculator class
Csortie.data.funcgroups.analysis.VolumeCalculator	Corresponds to the clVolumeCalculator class
►Csortie.data.funcgroups.disperse.DisperseBase
Csortie.data.funcgroups.disperse.MastingNonSpatialDisperse	Corresponds to the clMastingNonSpatialDisperse class
Csortie.data.funcgroups.disperse.NonSpatialDisperse	Corresponds to the clNonSpatialDispersal class
►Csortie.data.funcgroups.disperse.SpatialDisperseBase	Corresponds to the clSpatialDispersal class
Csortie.data.funcgroups.disperse.GapSpatialDisperse	Corresponds to the clSpatialDispersal class
Csortie.data.funcgroups.disperse.MastingSpatialDisperse	Corresponds to the clMastingSpatialDisperse class
Csortie.data.funcgroups.disperse.NonGapSpatialDisperse	Corresponds to the clSpatialDispersal class
Csortie.data.funcgroups.disperse.TemperatureDependentNeighborhoodDisperse	Corresponds to the clTemperatureDependentNeighborhoodDisperse class
Csortie.data.funcgroups.disperse.StochDoubleLogTempDepNeighDisperse	Corresponds to the clStochDoubleLogTempDepNeighDisperse class
Csortie.data.funcgroups.disturbance.CompetitionHarvest	Corresponds to the clCompetitionHarvest class
Csortie.data.funcgroups.disturbance.DensDepInfestation	Corresponds to the clDensDepInfestation class
Csortie.data.funcgroups.disturbance.EpisodicMortality	Corresponds to the clDisturbance class
Csortie.data.funcgroups.disturbance.GeneralizedHarvestRegime	Corresponds to the clGeneralizedHarvestRegime class
Csortie.data.funcgroups.disturbance.Harvest	Corresponds to the clDisturbance class
Csortie.data.funcgroups.disturbance.HarvestInterface	Corresponds to the clHarvestInterface class
Csortie.data.funcgroups.disturbance.InsectInfestation	Corresponds to the clInsectInfestation class
Csortie.data.funcgroups.disturbance.RandomBrowse	Corresponds to the clRandomBrowse class
Csortie.data.funcgroups.disturbance.SelectionHarvest	Corresponds to the clSelectionHarvest class
Csortie.data.funcgroups.disturbance.Storm	Corresponds to the clStorm class
Csortie.data.funcgroups.disturbance.StormDamageApplier	Corresponds to the clStormDamageApplier class
Csortie.data.funcgroups.disturbance.StormDamageKiller	Corresponds to the clStormKiller class
Csortie.data.funcgroups.disturbance.StormDirectKiller	Corresponds to the clStormDirectKiller class
Csortie.data.funcgroups.disturbance.Windstorm	Corresponds to the clWindstorm class
Csortie.data.funcgroups.epiphyticestablishment.EpiphyticEstablishment	Corresponds to the clEpiphyticEstablishment class
Csortie.data.funcgroups.establishment.ConspecificTreeDensitySeedSurvival	Corresponds to the clDensitySeedSurvival class
Csortie.data.funcgroups.establishment.DensityDependentSeedSurvival	Corresponds to the clDensitySeedSurvival class
Csortie.data.funcgroups.establishment.Establishment	Corresponds to the clEstablishment class
Csortie.data.funcgroups.establishment.LightDependentSeedSurvival	Corresponds to the clLightDepSeedSurvival class
Csortie.data.funcgroups.establishment.MicroEstablishment	Corresponds to the clMicroEstablishment class
Csortie.data.funcgroups.establishment.MicrotopographicSubstrateSeedSurvival	Corresponds to the clSubstrateDepSeedSurvival class
Csortie.data.funcgroups.establishment.ProportionalSeedSurvival	Corresponds to the clGermination class
Csortie.data.funcgroups.establishment.StormLightDependentSeedSurvival	Corresponds to the clLightDepSeedSurvival class
►Csortie.data.funcgroups.establishment.SubstrateDepEstablishmentBase
Csortie.data.funcgroups.establishment.GapSubstrateSeedSurvival	Corresponds to the clSubstrateDepSeedSurvival class
Csortie.data.funcgroups.establishment.NoGapSubstrateSeedSurvival	Corresponds to the clSubstrateDepSeedSurvival class
Csortie.data.funcgroups.growth.AbsoluteGrowthBALimited	Corresponds to the clAbsoluteGrowth class
Csortie.data.funcgroups.growth.AbsoluteGrowthRadialLimited	Corresponds to the clAbsoluteGrowth class
Csortie.data.funcgroups.growth.AbsoluteUnlimited	Corresponds to the clAbsoluteGrowth class
Csortie.data.funcgroups.growth.AllometricDiam	Corresponds to the clAllometricGrowthIncrementer class
Csortie.data.funcgroups.growth.AllometricHeight	Corresponds to the clAllometricGrowthIncrementer class
Csortie.data.funcgroups.growth.BrowsedRelativeGrowth	Corresponds to the clBrowsedRelativeGrowth class
Csortie.data.funcgroups.growth.ConstantBA	Corresponds to the clConstantBAGrowth class
Csortie.data.funcgroups.growth.ConstantRadial	Corresponds to the clConstantBAGrowth class
Csortie.data.funcgroups.growth.DoubleMMRel	Corresponds to the clDoubleMMRelGrowth class
Csortie.data.funcgroups.growth.LaggedPostHarvestGrowth	Corresponds to the clLaggedPostHarvestGrowth class
Csortie.data.funcgroups.growth.LinearBiLevel	Corresponds to the clLinearBiLevelGrowth class
Csortie.data.funcgroups.growth.LogBiLevel	Corresponds to the clLogBiLevelGrowth class
Csortie.data.funcgroups.growth.Logistic	Corresponds to the clLogisticGrowth class
Csortie.data.funcgroups.growth.LogisticHeightOnly	Corresponds to the clLogisticGrowth class
Csortie.data.funcgroups.growth.Lognormal	Corresponds to the clLognormalGrowth class
Csortie.data.funcgroups.growth.LognormalHeightOnly	Corresponds to the clLognormalGrowth class
Csortie.data.funcgroups.growth.MichMenNeg	Corresponds to the clMichMenNegGrowth class
Csortie.data.funcgroups.growth.MichMenPhotoinhibition	Corresponds to the clMichMenPhotoinhibition class
Csortie.data.funcgroups.growth.PowerHeight	Corresponds to the clPowerHeightGrowth class
Csortie.data.funcgroups.growth.PRSemiStochDiamOnly	Corresponds to the clPRSemiStochGrowth class
Csortie.data.funcgroups.growth.PRStormBiLevel	Corresponds to the clPRStormBiLevelGrowth class
Csortie.data.funcgroups.growth.RelativeGrowthBALimited	Corresponds to the clRelativeGrowth class
Csortie.data.funcgroups.growth.RelativeGrowthRadialLimited	Corresponds to the clRelativeGrowth class
Csortie.data.funcgroups.growth.RelativeHeight	Corresponds to the clRelativeGrowth class
Csortie.data.funcgroups.growth.RelativeUnlimited	Corresponds to the clRelativeGrowth class
Csortie.data.funcgroups.growth.ShadedLinearGrowth	Corresponds to the clShadedLinearGrowth class
Csortie.data.funcgroups.growth.ShadedLinearGrowthHeightOnly	Corresponds to the clShadedLinearGrowth class
Csortie.data.funcgroups.growth.SimpleLinear	Corresponds to the clSimpleLinearGrowth class
Csortie.data.funcgroups.growth.SimpleLinearHeightOnly	Corresponds to the clSimpleLinearGrowth class
Csortie.data.funcgroups.growth.SizeDepLogistic	Corresponds to the clSizeDepLogisticGrowth class
Csortie.data.funcgroups.growth.SizeDepLogisticHeightOnly	Corresponds to the clSizeDepLogisticGrowth class
Csortie.data.funcgroups.growth.StochasticGap	Corresponds to the clStochasticGapGrowth class
Csortie.data.funcgroups.light.AverageLight	Corresponds to the clAverageLight class
Csortie.data.funcgroups.light.BasalAreaLight	Corresponds to the clBasalAreaLight class
Csortie.data.funcgroups.light.ConstantGLI	Corresponds to the clConstantGLI class
Csortie.data.funcgroups.light.GapLight	Corresponds to the clGapLight class
►Csortie.data.funcgroups.light.GLIBase	Corresponds to the class
Csortie.data.funcgroups.light.GLILight	Corresponds to the clGLILight class
Csortie.data.funcgroups.light.GLIMap	Corresponds to the clGLIMap class
Csortie.data.funcgroups.light.GLIPoints	Corresponds to the clGLIPoints class
Csortie.data.funcgroups.light.QuadratGLILight	Corresponds to the clQuadratGLILight class
Csortie.data.funcgroups.light.SailLight	Corresponds to the clSailLight class
Csortie.data.funcgroups.light.LightFilter	Corresponds to the clLightFilter class
Csortie.data.funcgroups.light.StormLight	Corresponds to the clStormLight class
Csortie.data.funcgroups.management.QualityVigorClassifier	Corresponds to the clQualityVigorClassifier class
Csortie.data.funcgroups.mortality.AggregatedMortality	Corresponds to the clAggregatedMortality class
Csortie.data.funcgroups.mortality.BCMort	Corresponds to the clBCMort class
Csortie.data.funcgroups.mortality.BrowsedStochasticMortality	Corresponds to the clBrowsedStochasticMortality class
Csortie.data.funcgroups.mortality.ClimateCompDepNeighborhoodSurvival	Corresponds to the clClimateCompDepNeighborhoodSurvival class
Csortie.data.funcgroups.mortality.CompetitionMortality	Corresponds to the clCompetitionMort class
Csortie.data.funcgroups.mortality.DensitySelfThinning	Corresponds to the clDensitySelfThinning class
Csortie.data.funcgroups.mortality.DensitySelfThinningGompertz	Corresponds to the clDensitySelfThinningGompertz class
Csortie.data.funcgroups.mortality.ExpResourceMortality	Corresponds to the clExpResourceMortality class
Csortie.data.funcgroups.mortality.GMFMort	Corresponds to the clGMFMort class
Csortie.data.funcgroups.mortality.GrowthResourceMortality	Corresponds to the clResourceMortality class
Csortie.data.funcgroups.mortality.HeightGLIWeibullMortality	Corresponds to the clHeightGLIWeibullMortality class
Csortie.data.funcgroups.mortality.InsectInfestationMortality	Corresponds to the clInsectInfestationMortality class
Csortie.data.funcgroups.mortality.LogisticBiLevelMortality	Corresponds to the clLogisticBiLevelMortality class
Csortie.data.funcgroups.mortality.PostHarvestSkiddingMort	Corresponds to the clPostHarvestSkiddingMort class
Csortie.data.funcgroups.mortality.SelfThinMort	Corresponds to the clSelfThinMort class
Csortie.data.funcgroups.mortality.SenescenceMort	Corresponds to the clSenescenceMort class
Csortie.data.funcgroups.mortality.SizeDependentLogisticMortality	Corresponds to the clSizeDependentLogisticMortality class
Csortie.data.funcgroups.mortality.StochasticBiLevelLightMortality	Corresponds to the clStochasticBiLevelMortality class
Csortie.data.funcgroups.mortality.StochasticMort	Corresponds to the clStochasticMort class
Csortie.data.funcgroups.mortality.SuppressionDurationMort	Corresponds to the clSuppressionDurationMort class
Csortie.data.funcgroups.mortality.TempDepNeighborhoodSurvival	Corresponds to the clTempDependentNeighborhoodSurvival class
Csortie.data.funcgroups.mortality.WeibullSnagMort	Corresponds to the clWeibullSnagMort class
Csortie.data.funcgroups.mortalityutilities.DeadTreeRemover	Corresponds to the clTreeRemover class
Csortie.data.funcgroups.nci.CrowdingEffectDefault	This class calculates a crowding effect
Csortie.data.funcgroups.nci.CrowdingEffectNoSize	This class calculates a crowding effect with no size term
Csortie.data.funcgroups.nci.CrowdingEffectTempDep	This class calculates a crowding effect using the function:
Csortie.data.funcgroups.nci.DamageEffectDefault	This returns the damage effect due to storms
Csortie.data.funcgroups.nci.InfectionEffect	This class calculates an infection effect according to the term: Pest Effect = a * ln(T) + b where T is the time in years that an individual tree has been infested, and a and b are parameters
Csortie.data.funcgroups.nci.InfectionEffectSizeDependent	This class calculates an infection effect according to the term: Infection Effect = [a * ln(T) + b] * exp(-0.5*[( ((DBH-Xp)/X0) / Xb)^2] where
Csortie.data.funcgroups.nci.NCILargerNeighbors	The NCI term is simply a count of sapling and adult neighbors with a larger DBH than the target within a certain radius, subject to a minimum value
►Csortie.data.funcgroups.nci.NCIMasterBase	The base for behaviors using the flexible NCI system allowing the user to choose any combination of multiplicative effects
Csortie.data.funcgroups.nci.NCIMasterGrowth	Corresponds to the clNCIMasterGrowth class
Csortie.data.funcgroups.nci.NCIMasterMortality	Corresponds to the clNCIGrowth class
Csortie.data.funcgroups.nci.NCIMasterQuadratGrowth	Corresponds to the clNCIMasterQuadratGrowth class
Csortie.data.funcgroups.nci.NCINeighborBA	The NCI term is the sum of BA of neighbors
Csortie.data.funcgroups.nci.NCITermBARatio	NCIi is calculated using basal area ratio
Csortie.data.funcgroups.nci.NCITermBARatioDBHDefault	NCIi is calculated using basal area ratio, using a single default value for target tree size
Csortie.data.funcgroups.nci.NCITermDefault	NCIi is calculated as follows (simplifying the notation): NCIi = Σ λk((DBHk/q)α/distanceβ) where: we're summing over k = 0 to N neighbors greater than the minimum neighbor DBH α is the neighbor DBH effect parameter β is the neighbor distance effect parameter DBH is of the target tree, in cm q is the DBH divisor parameter DBHk is the DBH of the kth neighbor, in meters γ is the size sensitivity to NCI parameter λk is the NCI lambda parameter for the species of the kth neighbor distance is distance from target to neighbor, in meters
Csortie.data.funcgroups.nci.NCITermNCIBARatio	NCIi is calculated as follows (simplifying the notation): NCIi = Σ λk((DBHk)α/distanceβ) where: we're summing over k = 0 to N neighbors greater than the minimum neighbor DBH α is the neighbor DBH effect parameter β is the neighbor distance effect parameter DBH is of the target tree, in cm DBHk is the DBH of the kth neighbor, in meters γ is the size sensitivity to NCI parameter λk is the NCI lambda parameter for the species of the kth neighbor distance is distance from target to neighbor, in meters
Csortie.data.funcgroups.nci.NCITermNCIBARatioDBHDefault	NCIi is calculated as follows (simplifying the notation): NCIi = Σ λk((DBHk)α/distanceβ) where: we're summing over k = 0 to N neighbors greater than the minimum neighbor DBH α is the neighbor DBH effect parameter β is the neighbor distance effect parameter DBH is of the target tree, in cm DBHk is the DBH of the kth neighbor, in meters γ is the size sensitivity to NCI parameter λk is the NCI lambda parameter for the species of the kth neighbor distance is distance from target to neighbor, in meters
Csortie.data.funcgroups.nci.NCITermNCITempDepBARatio	NCIi is calculated as follows (simplifying the notation): NCIi = Σ λk((DBHk)α/distanceβ) where: we're summing over k = 0 to N neighbors greater than the minimum neighbor DBH α is the neighbor DBH effect parameter β is the neighbor distance effect parameter DBH is of the target tree, in cm DBHk is the DBH of the kth neighbor, in meters γ is the size sensitivity to NCI parameter λk is the NCI lambda parameter for the species of the kth neighbor distance is distance from target to neighbor, in meters
Csortie.data.funcgroups.nci.NCITermNCITempDepBARatioDBHDefault	NCIi is calculated as follows (simplifying the notation): NCIi = Σ λk((DBHk)α/distanceβ) where: we're summing over k = 0 to N neighbors greater than the minimum neighbor DBH α is the neighbor DBH effect parameter β is the neighbor distance effect parameter DBH is of the target tree, in cm DBHk is the DBH of the kth neighbor, in meters γ is the size sensitivity to NCI parameter λk is the NCI lambda parameter for the species of the kth neighbor distance is distance from target to neighbor, in meters
Csortie.data.funcgroups.nci.NCITermWithNeighborDamage	NCIi is calculated as follows (simplifying the notation): NCIi = Σ η λk((DBHk/q)α/distanceβ) where: we're summing over k = 0 to N neighbors greater than the minimum neighbor DBH η is the storm damage parameter of the target, depending on the damage status. It’s 1 if the neighbor is undamaged. α is the neighbor DBH effect parameter β is the neighbor distance effect parameter DBH is of the target tree, in cm q is the DBH divisor parameter DBHk is the DBH of the kth neighbor, in meters γ is the size sensitivity to NCI parameter λk is the NCI lambda parameter for the species of the kth neighbor distance is distance from target to neighbor, in meters Note that eta is per target species, not per neighbor (like lambda)
Csortie.data.funcgroups.nci.NCIWithSeedlings	This is an NCI term which allows seedlings to compete
Csortie.data.funcgroups.nci.NitrogenEffectGaussian	This class calculates a nitrogen effect according to the term: Nitrogen Effect = exp(-0.5*((NDEP - X0) / Xb)2) where:
Csortie.data.funcgroups.nci.PrecipitationEffectDoubleLogistic	This represents precipitation effect in NCI behaviors calculated with a double logistic function
Csortie.data.funcgroups.nci.PrecipitationEffectWeibull	This represents the default Weibull precipitation effect in NCI growth
Csortie.data.funcgroups.nci.ShadingDefault	This represents the default shading effect in NCI growth
Csortie.data.funcgroups.nci.SizeEffectCompoundExpInf	This represents the default size effect in NCI growth
Csortie.data.funcgroups.nci.SizeEffectCompoundExponential	This represents the default size effect in NCI growth
Csortie.data.funcgroups.nci.SizeEffectDefault	This represents the default size effect in NCI growth
Csortie.data.funcgroups.nci.SizeEffectLowerBounded	This represents the default size effect in NCI growth
Csortie.data.funcgroups.nci.SizeEffectPowerFunction	This represents the default size effect in NCI growth
Csortie.data.funcgroups.nci.SizeEffectShiftedLogInf	This represents a size effect in NCI growth that uses a shifted lognormal function
Csortie.data.funcgroups.nci.SizeEffectShiftedLognormal	This represents a size effect in NCI growth that uses a shifted lognormal function
Csortie.data.funcgroups.nci.TemperatureEffectDoubleLogistic	This represents temperature effect in NCI behaviors calculated with a double logistic function
Csortie.data.funcgroups.nci.TemperatureEffectWeibull	This represents the default Weibull temperature effect in NCI behaviors
Csortie.data.funcgroups.output.DetailedOutput	Corresponds to detailed output
Csortie.data.funcgroups.output.ShortOutput	Corresponds to short output
Csortie.data.funcgroups.planting.Planting	Corresponds to the clPlant class
Csortie.data.funcgroups.Plot	Holds clPlot data
Csortie.data.funcgroups.seedpredation.FuncResponseSeedPredation	Corresponds to the clFuncResponseSeedPredation class
Csortie.data.funcgroups.seedpredation.FuncResponseSeedPredationLnk	Corresponds to the clFuncResponseSeedPredation class
Csortie.data.funcgroups.seedpredation.NeighborhoodSeedPredation	Corresponds to the clNeighborhoodSeedPredation class
Csortie.data.funcgroups.seedpredation.NeighborhoodSeedPredationLnk	Corresponds to the clNeighborhoodSeedPredation class
Csortie.data.funcgroups.snagdynamics.SnagDecayClassDynamics	Corresponds to the clSnagDecomp class
Csortie.data.funcgroups.statechange.ClimateImporter	Corresponds to the clClimateImporter class
Csortie.data.funcgroups.statechange.PrecipitationClimateChange	Corresponds to the clClimateChange class
Csortie.data.funcgroups.statechange.SeasonalWaterDeficit	Corresponds to the clSeasonalWaterDeficit class
Csortie.data.funcgroups.statechange.TemperatureClimateChange	Corresponds to the clClimateChange class
Csortie.data.funcgroups.substrate.DetailedSubstrate	Corresponds to the clDetailedSubstrate class
Csortie.data.funcgroups.substrate.Substrate	Corresponds to the clSubstrate class
Csortie.data.funcgroups.TreeBehavior	Holds clTreePopulation data
Csortie.tools.parfileupdater.Behavior	Represents a single behavior in the core
Csortie.data.funcgroups.BehaviorInstantiator	Contains information for behavior instantiation
Csortie.gui.modelflowsetup.BehaviorPackager	Class for tracking behaviors
Csortie.gui.behaviorsetup.BehaviorParameterDisplay	Packages all the information needed for displaying a behavior's parameters
►Csortie.data.funcgroups.BehaviorTypeBase	This class functions as an organizer for model-level behaviors
Csortie.data.funcgroups.AnalysisBehaviors	Manages analysis behaviors and data
Csortie.data.funcgroups.DisperseBehaviors	This is the organizer class for all disperse behaviors
Csortie.data.funcgroups.DisturbanceBehaviors	This class manages data for disturbance behaviors
Csortie.data.funcgroups.EpiphyticEstablishmentBehaviors	Manages treefern establishment
Csortie.data.funcgroups.EstablishmentBehaviors	This is the organizer class for all establishment behaviors
Csortie.data.funcgroups.GrowthBehaviors	Controls the data relating to growth behaviors
Csortie.data.funcgroups.LightBehaviors	Manages data for the light behaviors
Csortie.data.funcgroups.ManagementBehaviors	Manages management behaviors and data
Csortie.data.funcgroups.MortalityBehaviors	Manages mortality behaviors and data
Csortie.data.funcgroups.MortalityUtilitiesBehaviors	This is the organizer class for the dead remover behavor
Csortie.data.funcgroups.OutputBehaviors	Manages output behaviors and data
Csortie.data.funcgroups.PlantingBehaviors	Manages planting behaviors and data
Csortie.data.funcgroups.PlotBehaviors	Plot object
Csortie.data.funcgroups.SeedPredationBehaviors	This class organizes the seed predation behaviors
Csortie.data.funcgroups.SnagDynamicsBehaviors	Manages snag dynamics data and behaviors
Csortie.data.funcgroups.StateChangeBehaviors	Manages state change behaviors
Csortie.data.funcgroups.SubstrateBehaviors	Manages substrate data and behaviors
Csortie.data.funcgroups.TreePopulation	This holds all data relating to the tree population
Csortie.data.simpletypes.Cell	This class holds a set of grid cell coordinates
Csortie.gui.ChartFrameInfo	This class bundles information and methods handy when dealing with chart frames
Csortie.tools.batchoutput.ChartInfo
►CChartMouseListener
Csortie.gui.harvepplant.EpisodicEventsMouseListener	Class for interpreting mouse clicks on the chart for selecting cells for episodic event editing
►CCloneable
Csortie.data.simpletypes.DataMember	An object of this class represents a data member from a grid or tree
Csortie.data.simpletypes.DetailedGridSettings	Captures the output settings for a single grid
Csortie.data.simpletypes.DetailedTreeSettings	This class packages together a set of tree settings
Csortie.datavisualizer.ModelHistogramDataset	This is a hack of the HistogramDataset in JFreeChart
Csortie.datavisualizer.XYTreeRenderer	A renderer that draws a circle at each data point
Csortie.data.simpletypes.ComboDisplay	Combines a text description of species/type combos with the actual data, for display in lists
►CComponentListener
Csortie.datavisualizer.DesktopListener	This class listens for the movement of desktop frames and resizes the desktop as necessary to make sure every part of it is reachable by scrolling
Csortie.data.funcgroups.nci.NCIEffect.crowding_effect	Flag values for which crowding effect term is desired
Csortie.data.funcgroups.nci.NCIEffect.damage_effect	Flag values for which damage effect term is desired
►Csortie.datavisualizer.DataFileManager	This class manages a single data file for the data visualizer
Csortie.datavisualizer.DetailedOutputFileManager	Controls the data visualization for a single detailed output file
Csortie.datavisualizer.ShortOutputFileManager	Manages all the data visualization for a single short output file
Csortie.datavisualizer.DataGrapher	Objects of this class can create graphs of various kinds, given data
►Csortie.data.simpletypes.DataMemberData	Abstract class holding data member-based data, such as trees or grid values
Csortie.data.funcgroups.GridValue	Class for holding the data for a single grid cell
Csortie.data.funcgroups.PackageGridValue	Class for holding the data for a single package
Csortie.data.funcgroups.Tree	Represents a single tree's data
Csortie.datavisualizer.DataVisualizerManager	This class takes care of managing data visualization
►Csortie.data.simpletypes.DetailedOutputSettings	Base class for detailed output settings
Csortie.data.simpletypes.DetailedGridSettings	Captures the output settings for a single grid
Csortie.data.simpletypes.DetailedTreeSettings	This class packages together a set of tree settings
Csortie.data.funcgroups.nci.NCIEffect.effectType	Identifier for different types of effects
►Csortie.gui.behaviorsetup.EnhancedTableWindow	Interface for classes wishing to use the EnhancedTable class
Csortie.gui.behaviorsetup.AllometryFunctionEditor	Makes a window for editing tree allometry functions
Csortie.gui.behaviorsetup.AllometryParameterEdit	This class displays the dialog for editing Allometry parameters, with a button for editing the function choices
Csortie.gui.behaviorsetup.ClimateImporterEditor	Makes a window for editing climate importer data
Csortie.gui.behaviorsetup.DefaultBehaviorParameterEdit	This class displays the default dialog for editing the parameters for a single behavior
Csortie.gui.behaviorsetup.NCIParameterEdit	This class displays the dialog for editing NCI parameters, with a button for editing the function choices
Csortie.gui.behaviorsetup.StormParameterEdit	This class displays the dialog for editing Storm parameters, with a button for scheduling storms
Csortie.gui.GridValueEditor	Window for editing grid values in a spreadsheet-like format
Csortie.gui.ErrorGUI	This class handles all error message writing
►CFileFilter
Csortie.gui.components.FileOpenFilter	This provides a file filter which shows all potential SORTIE file types: .xml, .hvr, .txt, and .gz.tar files
Csortie.gui.components.OutFileFilter	File filter for short output files
Csortie.gui.components.OutputFileFilter	This provides a filter for output files - .out and .gz.tar files
Csortie.gui.components.TextFileFilter	File filter for text files
Csortie.gui.components.XMLFileFilter	This filters to only XML files for file choosers
Csortie.gui.DetailedOutputFileFilter	This provides a filter for data files - .gz.tar files
►CFocusListener
Csortie.gui.behaviorsetup.EnhancedTable	Provides extensions and customizations for JTable
Csortie.data.funcgroups.Grid	This class represents grids in the core model
►Csortie.tools.parfileupdater.GroupBase
Csortie.tools.parfileupdater.AnalysisBehaviors	Manages analysis behaviors and data
Csortie.tools.parfileupdater.DisperseBehaviors	This is the organizer class for all disperse behaviors
Csortie.tools.parfileupdater.DisturbanceBehaviors
Csortie.tools.parfileupdater.EpiphyticEstablishmentBehaviors
Csortie.tools.parfileupdater.EstablishmentBehaviors
Csortie.tools.parfileupdater.GrowthBehaviors
Csortie.tools.parfileupdater.LightBehaviors
Csortie.tools.parfileupdater.ManagementBehaviors
Csortie.tools.parfileupdater.MortalityBehaviors
Csortie.tools.parfileupdater.MortalityUtilitiesBehaviors
Csortie.tools.parfileupdater.OutputBehaviors
Csortie.tools.parfileupdater.PlantingBehaviors
Csortie.tools.parfileupdater.SeedPredationBehaviors
Csortie.tools.parfileupdater.SnagDynamicsBehaviors
Csortie.tools.parfileupdater.StateChangeBehaviors
Csortie.tools.parfileupdater.SubstrateBehaviors
Csortie.gui.GUIManager	The GUI manager provides all behind-the-scenes functionality for the Main Window
Csortie.data.funcgroups.disturbance.HarvestData	This class encapsulates the data for a single harvest event - being for one timestep, for one cut type
Csortie.datavisualizer.HistogramBin	Copied from HistogramBin in JFreeChart by Jelai Wang with some modifications
Csortie.data.funcgroups.nci.NCIEffect.infection_effect	Flag values for which infection effect term is desired
Csortie.parfile.Interface	Interface between the Java GUI and the C++ application core
Csortie.gui.MainWindowStateSetter	The purpose of this class is to control the states of the main window - all the enabling and disabling, etc
Csortie.parfile.Model	Main class that's called to start the application
Csortie.tools.parfileupdater.ModelData	This is a base class for packaging data values with additional information
►Csortie.data.simpletypes.ModelData	This is a base class for packaging data values with additional information
Csortie.data.simpletypes.ModelEnum	Packages a data value with other information
Csortie.data.simpletypes.ModelFloat	This class packages float values with additional information
Csortie.data.simpletypes.ModelInt	This class packages integer values with additional data
Csortie.data.simpletypes.ModelString	Packages a String value together with additional data
Csortie.data.simpletypes.ModelVector	This class packages vector data with other pieces of information important to the model
Csortie.fileops.ModelFileFunctions	This provides common file-reading functions for reading tab-delimited files
Csortie.data.simpletypes.ModelMessage	Structure for message passing
►CMouseListener
Csortie.gui.harvepplant.EpisodicEventsMouseListener	Class for interpreting mouse clicks on the chart for selecting cells for episodic event editing
►CMouseMotionListener
Csortie.gui.harvepplant.EpisodicEventsMouseListener	Class for interpreting mouse clicks on the chart for selecting cells for episodic event editing
Csortie.data.funcgroups.nci.NCIEffect.nci_term	Flag values for which NCI term is desired
Csortie.data.funcgroups.nci.NCIEffect	This class provides a class for NCI effects with organizing information
Csortie.data.funcgroups.nci.NCIEffect.nitrogen_effect	Flag values for which nitrogen effect term is desired
►CObject
Csortie.fileops.TarArchive	The TarArchive class implements the concept of a tar archive
Csortie.parfile.ParFileHelpers
Csortie.data.funcgroups.planting.PlantingData	This class encapsulates the data for a single planting event - being for one species, for one timestep
Csortie.data.funcgroups.nci.NCIEffect.precipitation_effect	Flag values for which precipitation effect term is desired
Csortie.sax.SaxParseTools
Csortie.gui.ScheduledStormInfo	Holds data for scheduled storms grouped together
Csortie.data.funcgroups.Behavior.setupType	How this behavior's setup interface is handled
Csortie.data.funcgroups.nci.NCIEffect.shading_effect	Flag values for which shading effect term is desired
Csortie.data.funcgroups.nci.NCIEffect.size_effect	Flag values for which size effect term is desired
Csortie.gui.components.SORTIEComboBox< sortie.gui.ChartFrameInfo >
Csortie.gui.components.SORTIEComboBox< String >
Csortie.data.funcgroups.SpeciesSpecific	This class will package together a data member and an array of booleans on which species uses it
Csortie.data.simpletypes.SpeciesTypeCombo	This class allows you to group together a species number and a type number into one object that can be placed in an array or vector or passed as an argument
Csortie.data.funcgroups.Subplot	This rolls up a set of cell coordinates into a defined subplot
Csortie.parfile.SwingWorker
►CSwingWorker
Csortie.tools.batchoutput.FileAnalysisBackgroundProcess	This class performs the file analysis of output files in a background thread so that it can be reported on with the progress bar or canceled
Csortie.tools.batchoutput.FileWritingBackgroundProcess	This class triggers the writing of the chosen output in a background thread so that it can be reported on with the progress bar or canceled
Csortie.gui.behaviorsetup.TableData	For packaging header data in a typesafe way
Csortie.fileops.Tarball	Functions for working with tarballs (.gz.tar files)
Csortie.data.funcgroups.nci.NCIEffect.temperature_effect	Flag values for which temperature effect term is desired
Csortie.parfile.SwingWorker.ThreadVar	Class to maintain reference to current worker thread under separate synchronization control
►CThrowable
Csortie.data.simpletypes.ModelException	Model exception class
Csortie.data.funcgroups.TreeOutputSaveInfo	This collects tree saving information for short output for one tree type
Csortie.data.funcgroups.ValidationHelpers
►CWindowListener
Csortie.gui.MainWindow	Main application window
Csortie.gui.harvepplant.DisplayWindowBase.windowType
Csortie.datavisualizer.XYZDataItem	Represents one (x, y, z) data item for an xyz-series
►CAbstractIntervalXYDataset
Csortie.datavisualizer.ModelHistogramDataset	This is a hack of the HistogramDataset in JFreeChart
►CAbstractXYItemRenderer
Csortie.datavisualizer.XYCellRenderer	This class fills in map cell rectangles on a plot
Csortie.datavisualizer.XYSimpleCellRenderer	This class fills in map cell rectangles on a plot
Csortie.datavisualizer.XYTreeRenderer	A renderer that draws a circle at each data point
►CAbstractXYZDataset
Csortie.datavisualizer.XYZSimpleDataset	A simple implementation of the jorg.jfree.data.xyXYZDataset interface that stores data values in arrays of bool primitives
►CActionListener
Csortie.datavisualizer.DesktopListener	This class listens for the movement of desktop frames and resizes the desktop as necessary to make sure every part of it is reachable by scrolling
Csortie.datavisualizer.DetailedOutputLegend	This extends the legend class and adds some features specific to the viewing of detailed output files - specifically the ability to step through timesteps
Csortie.datavisualizer.GridAllSpeciesHistogramDataRequest	This controls the drawing of a histogram for all species at once for a grid for those grids that display values by species
Csortie.datavisualizer.GridHistogramDataRequest	This controls the drawing of a histogram for a single piece of grid information
Csortie.datavisualizer.HistogramDataRequest	This controls the drawing of a histogram for a single piece of information
►Csortie.datavisualizer.Legend	This is an internal frame which displays a color legend for species-based charts
Csortie.datavisualizer.DetailedOutputLegend	This extends the legend class and adds some features specific to the viewing of detailed output files - specifically the ability to step through timesteps
Csortie.datavisualizer.NoSpeciesLegend	This is a class for displaying a color legend for non-species-based charts
Csortie.datavisualizer.StockTableDataRequest	Writes a stock table for a detailed output file
Csortie.datavisualizer.TreeMapCrownRadDataRequest	This class manages the data for, and draws, tree maps
Csortie.datavisualizer.TreeMapDataRequest	This class manages the data for, and draws, tree maps
Csortie.gui.BatchSetup	Window for working with batch files
Csortie.gui.behaviorsetup.AllometryFunctionEditor	Makes a window for editing tree allometry functions
Csortie.gui.behaviorsetup.AllometryParameterEdit	This class displays the dialog for editing Allometry parameters, with a button for editing the function choices
Csortie.gui.behaviorsetup.ClimateImporterEditor	Makes a window for editing climate importer data
Csortie.gui.behaviorsetup.DefaultBehaviorParameterEdit	This class displays the default dialog for editing the parameters for a single behavior
Csortie.gui.behaviorsetup.EnhancedTable	Provides extensions and customizations for JTable
Csortie.gui.behaviorsetup.HarvestInterfaceSetup	This is a window allowing setup of the Harvest Interface behavior
Csortie.gui.behaviorsetup.HarvestInterfaceSetup.FileColumnsChooser	Dialog for choosing new file columns
Csortie.gui.behaviorsetup.NCIEffectsEditor	Makes a window for editing NCI functions
Csortie.gui.behaviorsetup.NCIParameterEdit	This class displays the dialog for editing NCI parameters, with a button for editing the function choices
Csortie.gui.behaviorsetup.ParameterEdit	Window used to trigger the parameter editing process
Csortie.gui.behaviorsetup.StormParameterEdit	This class displays the dialog for editing Storm parameters, with a button for scheduling storms
Csortie.gui.DetailedOutputDeadTreeSetup	Window used by the user to set up detailed output output options for dead trees
Csortie.gui.DetailedOutputFileCopy	This window will rename a detailed output file
Csortie.gui.DetailedOutputFileSetup	Window that the user uses to set up detailed output options
Csortie.gui.DetailedOutputGridSetup	Window the user uses to set up detailed output options for grids
Csortie.gui.DetailedOutputTreeSetup	Window used by the user to set up detailed output tree output options
Csortie.gui.GridCellEditor	This is a simple dialog box which will allow editing of grid cell resolution for a single grid
Csortie.gui.GridSetup	Displays grid settings for editing
Csortie.gui.harvepplant.Diam10Edit	For editing initial diam10s for planting
►Csortie.gui.harvepplant.DisplayWindowBase	Provides a base class with common methods for display of current specifications for harvest, episodic mortality, and planting
Csortie.gui.harvepplant.HarvestDisplayWindow	Displays harvest events and allows for editing
Csortie.gui.harvepplant.MortalityEpisodeDisplayWindow	Displays episodic events and allows for editing
Csortie.gui.harvepplant.PlantingDisplayWindow	Displays planting events and allows for editing
►Csortie.gui.harvepplant.EditWindowBase	Base class for windows for disturbance and planting event editing
Csortie.gui.harvepplant.HarvestEdit	Window for harvest editing
Csortie.gui.harvepplant.MortalityEpisodeEdit	Window for mortality episode editing
Csortie.gui.harvepplant.PlantEdit	Window for planting editing
Csortie.gui.harvepplant.HarvestDisplayWindow	Displays harvest events and allows for editing
Csortie.gui.harvepplant.HarvestEdit	Window for harvest editing
Csortie.gui.harvepplant.MortalityEpisodeDisplayWindow	Displays episodic events and allows for editing
Csortie.gui.harvepplant.MortalityEpisodeEdit	Window for mortality episode editing
Csortie.gui.harvepplant.PlantEdit	Window for planting editing
Csortie.gui.harvepplant.PlantingDisplayWindow	Displays planting events and allows for editing
Csortie.gui.MainWindow	Main application window
Csortie.gui.ManageTreeMap	Allows management of tree maps
Csortie.gui.modelflowsetup.DisplayBehaviorComboEdit	Displays an edit window for editing the tree species/type combos to which a single behavior applies
Csortie.gui.modelflowsetup.DisplayBehaviorEdit	Displays the edit window for editing behavior order
Csortie.gui.modelflowsetup.DisplayComboEdit	Displays the edit window for editing behavior flow for a tree species/ type combo
Csortie.gui.modelflowsetup.ModelFlowSetup	Allows users to make changes to the model flow and behavior order
Csortie.gui.OutputSetup	Window used by the user to start setting up run output options
Csortie.gui.ScheduledStormSetup	This is a window allowing scheduling of storms for the storm behavior
Csortie.gui.ShortOutputFileSetup	Window used by the user to set up summary (short) output files
Csortie.gui.SizeClassEditor	Displays dialog for entering size class data
Csortie.gui.SubplotEdit	Window for editing subplot information
Csortie.gui.TreeSpeciesSetup	Dialog allowing the user to set up basic tree information
Csortie.gui.TreeSpeciesSetup.CopySpeciesEditor	This class creates an interface for copying species
Csortie.tools.batchoutput.BatchOptionsDialog	This class collects options needed for a data request for batch writing
Csortie.tools.batchoutput.FileChoosingWindow	Shows the window for choosing a set of detailed output files - step 1 of the wizard
Csortie.tools.batchoutput.OptionChoosingWindow	Shows the window for choosing save options - step 2 of the wizard
Csortie.tools.batchoutput.ProgressDialog	A small progress dialog to inform the user of file option extraction progress
►CDefaultHandler
Csortie.datavisualizer.DetailedOutputFileSetupParseHandler	Plugs into the Xerces SAX parser to handle the incoming data when the detailed output setup XML file is parsed
Csortie.datavisualizer.DetailedOutputTimestepParseHandler	An object of this class will parse detailed output timestep files and pass the data to a DetailedOutputFileManager object
Csortie.sax.ParameterFileParser	SAX parameter file parse handler
Csortie.tools.parfileupdater.OldParFileParser	SAX parameter file parse handler
►CFont
Csortie.gui.components.SortieFont	The common font for all GUI elements
►CIcon
Csortie.gui.components.ModelIcon	Creates different icons needed by the model
►CInternalFrameListener
Csortie.gui.MainWindow	Main application window
►CIntervalXYDataset
Csortie.datavisualizer.ModelHistogramDataset	This is a hack of the HistogramDataset in JFreeChart
►CJComboBox
Csortie.gui.components.SORTIEComboBox< T >	Improves the basic combo box by allowing the popup area to be bigger than the box itself
►CJDialog
Csortie.gui.BatchSetup	Window for working with batch files
Csortie.gui.behaviorsetup.AllometryFunctionEditor	Makes a window for editing tree allometry functions
Csortie.gui.behaviorsetup.AllometryParameterEdit	This class displays the dialog for editing Allometry parameters, with a button for editing the function choices
Csortie.gui.behaviorsetup.ClimateImporterEditor	Makes a window for editing climate importer data
Csortie.gui.behaviorsetup.DefaultBehaviorParameterEdit	This class displays the default dialog for editing the parameters for a single behavior
Csortie.gui.behaviorsetup.HarvestInterfaceSetup	This is a window allowing setup of the Harvest Interface behavior
Csortie.gui.behaviorsetup.HarvestInterfaceSetup.FileColumnsChooser	Dialog for choosing new file columns
Csortie.gui.behaviorsetup.NCIEffectsEditor	Makes a window for editing NCI functions
Csortie.gui.behaviorsetup.NCIParameterEdit	This class displays the dialog for editing NCI parameters, with a button for editing the function choices
Csortie.gui.behaviorsetup.ParameterEdit	Window used to trigger the parameter editing process
Csortie.gui.behaviorsetup.StormParameterEdit	This class displays the dialog for editing Storm parameters, with a button for scheduling storms
Csortie.gui.DetailedOutputDeadTreeSetup	Window used by the user to set up detailed output output options for dead trees
Csortie.gui.DetailedOutputFileSetup	Window that the user uses to set up detailed output options
Csortie.gui.DetailedOutputGridSetup	Window the user uses to set up detailed output options for grids
Csortie.gui.DetailedOutputTreeSetup	Window used by the user to set up detailed output tree output options
Csortie.gui.GridCellEditor	This is a simple dialog box which will allow editing of grid cell resolution for a single grid
Csortie.gui.GridSetup	Displays grid settings for editing
Csortie.gui.GridValueEditor	Window for editing grid values in a spreadsheet-like format
Csortie.gui.harvepplant.Diam10Edit	For editing initial diam10s for planting
Csortie.gui.harvepplant.DisplayWindowBase	Provides a base class with common methods for display of current specifications for harvest, episodic mortality, and planting
Csortie.gui.harvepplant.EditWindowBase	Base class for windows for disturbance and planting event editing
Csortie.gui.ManageTreeMap	Allows management of tree maps
Csortie.gui.modelflowsetup.DisplayBehaviorComboEdit	Displays an edit window for editing the tree species/type combos to which a single behavior applies
Csortie.gui.modelflowsetup.DisplayBehaviorEdit	Displays the edit window for editing behavior order
Csortie.gui.modelflowsetup.DisplayComboEdit	Displays the edit window for editing behavior flow for a tree species/ type combo
Csortie.gui.modelflowsetup.ModelFlowSetup	Allows users to make changes to the model flow and behavior order
Csortie.gui.OutputSetup	Window used by the user to start setting up run output options
Csortie.gui.ScheduledStormSetup	This is a window allowing scheduling of storms for the storm behavior
Csortie.gui.ShortOutputFileSetup	Window used by the user to set up summary (short) output files
Csortie.gui.SizeClassEditor	Displays dialog for entering size class data
Csortie.gui.SubplotEdit	Window for editing subplot information
Csortie.gui.TreeSpeciesSetup	Dialog allowing the user to set up basic tree information
Csortie.gui.TreeSpeciesSetup.CopySpeciesEditor	This class creates an interface for copying species
Csortie.tools.batchoutput.BatchOptionsDialog	This class collects options needed for a data request for batch writing
Csortie.tools.batchoutput.FileChoosingWindow	Shows the window for choosing a set of detailed output files - step 1 of the wizard
Csortie.tools.batchoutput.OptionChoosingWindow	Shows the window for choosing save options - step 2 of the wizard
Csortie.tools.batchoutput.ProgressDialog	A small progress dialog to inform the user of file option extraction progress
►CJFileChooser
Csortie.gui.components.ModelFileChooser	Manages directories for SORTIE
►CJFrame
Csortie.gui.DetailedOutputFileCopy	This window will rename a detailed output file
Csortie.gui.MainWindow	Main application window
►CJInternalFrame
Csortie.datavisualizer.Legend	This is an internal frame which displays a color legend for species-based charts
Csortie.datavisualizer.ModelInternalFrame	Ensures consistent behavior across graph windows
►CJLabel
Csortie.gui.components.SortieLabel	Wrapper class for labels which set them up with the correct font
►CJMenuItem
Csortie.gui.components.SortieMenuItem	This class wraps the JMenuItem class to set some things we always want to set in the constructor as a convenience
►CJPanel
Csortie.datavisualizer.NoSpeciesLegend	This is a class for displaying a color legend for non-species-based charts
Csortie.gui.behaviorsetup.QuickScrollingPanel	This class creates a JPanel that scrolls at a normal speed through a JScrollPane
Csortie.gui.components.OKCancelButtonPanel	A panel containing OK, Cancel, and Help buttons
►CJTable
Csortie.gui.behaviorsetup.EnhancedTable	Provides extensions and customizations for JTable
►CJTextArea
Csortie.gui.components.MultilineLabel	Renders a multi-line "JLabel"
►CMouseAdapter
Csortie.tools.batchoutput.PopupListener
►CPropertyChangeListener
Csortie.tools.batchoutput.ProgressChangeListener	This class listens for published progress reports and updates the progress dialog accordingly
►CScrollable
Csortie.gui.behaviorsetup.QuickScrollingPanel	This class creates a JPanel that scrolls at a normal speed through a JScrollPane
►CTreeSelectionListener
Csortie.gui.modelflowsetup.ModelFlowSetup	Allows users to make changes to the model flow and behavior order
►CXYItemRenderer
Csortie.datavisualizer.XYCellRenderer	This class fills in map cell rectangles on a plot
Csortie.datavisualizer.XYSimpleCellRenderer	This class fills in map cell rectangles on a plot
Csortie.datavisualizer.XYTreeRenderer	A renderer that draws a circle at each data point
►CXYZDataset
Csortie.datavisualizer.XYZSimpleDataset	A simple implementation of the jorg.jfree.data.xyXYZDataset interface that stores data values in arrays of bool primitives
►CXYZToolTipGenerator
Csortie.datavisualizer.XYCellRenderer.CellTooltipGenerator	Provides a more informative tooltip string for cell values
Csortie.datavisualizer.XYTreeRenderer.TreeTooltipGenerator	Provides a more informative tooltip string for cell values